View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16449_low_3 (Length: 367)

Name: NF16449_low_3
Description: NF16449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16449_low_3
NF16449_low_3
[»] chr3 (10 HSPs)
chr3 (183-364)||(4840360-4840541)
chr3 (19-73)||(4837428-4837482)
chr3 (19-73)||(4826532-4826586)
chr3 (35-73)||(4841959-4841997)
chr3 (35-73)||(4852608-4852646)
chr3 (35-73)||(4856579-4856617)
chr3 (35-73)||(4878314-4878352)
chr3 (154-182)||(4837187-4837215)
chr3 (35-67)||(4842873-4842905)
chr3 (35-67)||(4868569-4868601)
[»] chr6 (2 HSPs)
chr6 (180-364)||(14360772-14360956)
chr6 (180-364)||(13069608-13069792)
[»] chr8 (1 HSPs)
chr8 (180-364)||(28157353-28157537)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 183 - 364
Target Start/End: Complemental strand, 4840541 - 4840360
Alignment:
Q  183 tccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcatctc 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4840541 tccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctc 4840442  T
Q  283 atacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4840441 atacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcg 4840360  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4837482 - 4837428
Alignment:
Q  19 agtgtaacattgttgaatttagtaaatgacttatattgaccataaactcacattg 73  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4837482 agtgtagcattgttgaatttagtaaatgacttatattgaccataaactcacattg 4837428  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4826586 - 4826532
Alignment:
Q  19 agtgtaacattgttgaatttagtaaatgacttatattgaccataaactcacattg 73  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  4826586 agtgtaacattcttgaatttagtaaatgacttagattgaccataaactcacattg 4826532  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 4841997 - 4841959
Alignment:
Q  35 atttagtaaatgacttatattgaccataaactcacattg 73  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  4841997 atttagtaaataacttagattgaccataaactcacattg 4841959  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 4852646 - 4852608
Alignment:
Q  35 atttagtaaatgacttatattgaccataaactcacattg 73  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  4852646 atttagtaaatgacttagatcgaccataaactcacattg 4852608  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 4856617 - 4856579
Alignment:
Q  35 atttagtaaatgacttatattgaccataaactcacattg 73  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  4856617 atttagtacatgacttagattgaccataaactcacattg 4856579  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 4878352 - 4878314
Alignment:
Q  35 atttagtaaatgacttatattgaccataaactcacattg 73  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  4878352 atttagtacatgacttagattgaccataaactcacattg 4878314  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 4837215 - 4837187
Alignment:
Q  154 gcataagtattcatgcatgctttttgtag 182  Q
    |||||||||||||||||||||||||||||    
T  4837215 gcataagtattcatgcatgctttttgtag 4837187  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 4842905 - 4842873
Alignment:
Q  35 atttagtaaatgacttatattgaccataaactc 67  Q
    ||||||||||||||||| |||||||||||||||    
T  4842905 atttagtaaatgacttagattgaccataaactc 4842873  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 4868601 - 4868569
Alignment:
Q  35 atttagtaaatgacttatattgaccataaactc 67  Q
    ||||||||||||||||| |||||||||||||||    
T  4868601 atttagtaaatgacttagattgaccataaactc 4868569  T

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Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 14360956 - 14360772
Alignment:
Q  180 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcat 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  14360956 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcat 14360857  T
Q  280 ctcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 364  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||    
T  14360856 ctcatacaaattcattcactgcaccctttgacgaaactgacgaactaatagaagtcgttttctgcacgcttttccttctcactcg 14360772  T

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Target: chr6; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 13069792 - 13069608
Alignment:
Q  180 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcat 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13069792 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcat 13069693  T
Q  280 ctcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 364  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  13069692 ctcatacgaattcattcactgcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcg 13069608  T

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Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 180 - 364
Target Start/End: Original strand, 28157353 - 28157537
Alignment:
Q  180 tagtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcat 279  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  28157353 tagtccgaacccttcaaaccatatgtcatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcat 28157452  T
Q  280 ctcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg 364  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  28157453 ctcatacgaattcattcactgcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcg 28157537  T

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