View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16449_low_4 (Length: 310)
Name: NF16449_low_4
Description: NF16449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16449_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 46985421 - 46985713
Alignment:
| Q |
1 |
ttttttgacggtgtcatacgcaaataactgcacgtcaataacatgtgattgcagtgtcaatatcttgaactcatgccaaaagttacatatttgttagtta |
100 |
Q |
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| T |
46985421 |
ttttttgacggtgtcatacgcaaataactgcacgtcaataacatgtgattgcagtgtcaatatcttgaactcatgccaaaagttacatatttgttagtta |
46985520 |
T |
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| Q |
101 |
taatgatatgacgatatgtgtgactttagaaatagttacaattaaagccgaacgtttttgatgatttgaccattactattgattgtgtataatattttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46985521 |
taatgatatgacgatatgtgtgactttagaaatagttacaattaaagccgaacgtttttgatgatttgacgattactattgattgtgtataatattttta |
46985620 |
T |
|
| Q |
201 |
cactcacaatggacgtgaattaaactaacctgatataaacttgcaaaaactcaaatgatcacatacatctatcatgatatcttctaatccaag |
293 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46985621 |
cactcacaatggacgtgaattaaaccaacctgatataaacttgcaaaaactcaaatgatcacatacatctatcatgatatcttctaatccaag |
46985713 |
T |
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