View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16449_low_5 (Length: 299)
Name: NF16449_low_5
Description: NF16449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16449_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 4826912 - 4826779
Alignment:
| Q |
139 |
attaagattttagaggttaaattgacgaacttttgtatagtctaatgacaaaattagtggtatttgtatacttttagagctacatatattatatttatgt |
238 |
Q |
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| T |
4826912 |
attaagattttggaggctaaattgacgaactttcgtatactctaataacaaaattagtggtatttgtatactttaagagctac--atattatatttatgt |
4826815 |
T |
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| Q |
239 |
agtttatagattaaattgaagttctatttttcatat |
274 |
Q |
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| T |
4826814 |
agtttaaagatcaaattgaagatctatttttcatat |
4826779 |
T |
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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4827058 - 4827006
Alignment:
| Q |
1 |
ggtaatatatatttgagttaacaatctatttagttcttaaactatatctctct |
53 |
Q |
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| T |
4827058 |
ggtaatatatatttgagttaacaatctatttagttcttaaactatatctctct |
4827006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 30253910 - 30253944
Alignment:
| Q |
225 |
tattatatttatgtagtttatagattaaattgaag |
259 |
Q |
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| T |
30253910 |
tattatatttatgtagtttaaagattaaattgaag |
30253944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 2473577 - 2473610
Alignment:
| Q |
225 |
tattatatttatgtagtttatagattaaattgaa |
258 |
Q |
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| T |
2473577 |
tattatatttacgtagtttatagattaaattgaa |
2473610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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