View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1644_low_1 (Length: 408)
Name: NF1644_low_1
Description: NF1644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1644_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 13724898 - 13724568
Alignment:
| Q |
18 |
tcaacctcaaccgctccgagaagttatcggtcgccaacctcagctcctcctcattgtactctctcattccaatactcgtgatgttgtcactcagcctcgc |
117 |
Q |
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| T |
13724898 |
tcaacctcaaccgctctgagaagttatcggtcgccaacctcagctcctcctcactgtactctctcattccaatactcgtgatgttgtcactcagcctcgc |
13724799 |
T |
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| Q |
118 |
agccatgcctattattacatataaagtaagttaataattagttag-----------tttagttatctttgtattccgcgcctattttggtgcacctagta |
206 |
Q |
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| T |
13724798 |
agccatgcctattattacatataaagtaagttaataattagttaggagttagttagtttagttatctttgtattccacgcctattttggtgcacctagta |
13724699 |
T |
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| Q |
207 |
gtagtattttctttttctttcaaaactttgtgtttaagcaa-tatcaaatttaaagttagttaatacctatggcatccttctgcttgcaaaattcaatcc |
305 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13724698 |
gtagtattttctttttctttcaaaactttttgtttaagcaaatatcaaatttaaagttagttaatacctatggcatccttctgcttgcaaaattcaatcc |
13724599 |
T |
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| Q |
306 |
ttctatttaaaacatctctttgcttccttaa |
336 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
13724598 |
ttctatttaacacatctctttgcttccttaa |
13724568 |
T |
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