View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1644_low_2 (Length: 318)
Name: NF1644_low_2
Description: NF1644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1644_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 19162840 - 19163165
Alignment:
| Q |
1 |
cgaggtctcaggttcgattctctcctatgagtgggctaatttagtttctaaaagaatatcacagtcttactcatcgtgacgactgaaaggatgactcaat |
100 |
Q |
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| T |
19162840 |
cgagatctcaggttcgattctctcctatgagtgggctaatttagtttctaaaagaatatcacagtcttactcatcgtgacgactgaaaggatgactcaat |
19162939 |
T |
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| Q |
101 |
----------ttgttaaaaaacaacgaaacaaatataaattcttcaaaactgaactggtatttcttttctcatgtttttgttgattcaatactgataaga |
190 |
Q |
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| T |
19162940 |
cagtgtcggtttgttaaaaaacaacgaaacaaatataaattcttcaaaactcaactggtatttcttttctcatgtttttgttgattcaataccgataaga |
19163039 |
T |
|
| Q |
191 |
tcacaaactcaacagtaagcgattttcaagcgtcgattttaagaattttttatacttatatttgctttaattatgtgaatgcaggagctaccagataaca |
290 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19163040 |
tcacaaactcaacagtaagctattttcaagcatcgattttaagaattttttatacttatatttgctttaattatgtgaatgcaggagctaccagataacg |
19163139 |
T |
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| Q |
291 |
tctttgctttattgatgatgtccatc |
316 |
Q |
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|||||||||||||||||||||||||| |
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| T |
19163140 |
tctttgctttattgatgatgtccatc |
19163165 |
T |
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