View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1644_low_4 (Length: 204)
Name: NF1644_low_4
Description: NF1644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1644_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 24620670 - 24620873
Alignment:
| Q |
1 |
aaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaatatagacaagacacgtgaacactagtaataaaatatga |
100 |
Q |
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| T |
24620670 |
aaactgactacgaagtctctatttcaaggcaatcttgatgctcaaatgcgatgaagtaccaataaagacaagacatgtgaacactagtaataaaatatga |
24620769 |
T |
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| Q |
101 |
aaatagaagtaagtgaatgtaattacgtgcgttagtgtcgtatgttggaccttgaatttgatgtgtggggctacataggtcaaatgtagcatgggttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24620770 |
aaatagaagtaagtgaatgtaattacgtgcgtcagtgtcgtatgttggaccttcaatttgatgtatggggctacataggtcaaatgtagcatgggttcct |
24620869 |
T |
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| Q |
201 |
cgcc |
204 |
Q |
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|||| |
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| T |
24620870 |
cgcc |
24620873 |
T |
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