View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1645-INSERTION-1 (Length: 733)
Name: NF1645-INSERTION-1
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1645-INSERTION-1 |
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Alignment Details
Target: chr4 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 8 - 694
Target Start/End: Original strand, 1599332 - 1600025
Alignment:
| Q |
8 |
gaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatat--taatttgttctactctcacttgtggagtgaagtta |
105 |
Q |
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| T |
1599332 |
gaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatatattaatttgttctactctcacttgtggagtgaagtta |
1599431 |
T |
|
| Q |
106 |
ttattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattgcc |
205 |
Q |
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| T |
1599432 |
ttattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattgcc |
1599531 |
T |
|
| Q |
206 |
gttttttaacaaaccatggtatatggaagttaaggaattctagacatgttttaaagctctaaagtcc-----caatcagaatccctctaaaatgttatca |
300 |
Q |
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| T |
1599532 |
gttttttaacaaaccatggtatatggaagttaaggaattttagacatgttttaaagctctaaagtcccgtcccaatcagaatccctctaaaatgttatca |
1599631 |
T |
|
| Q |
301 |
aacccacaatcttacattccttcaattttaactaaaaatctttgttagtaaacaatatgtcgtgtgccaattcaatgaaaactaaatcttgtttattttt |
400 |
Q |
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| T |
1599632 |
aacccacaatcttacattccttcaattttaactaaaaatctttgttagtaaacaatatatcgtgtgccaattcaatgaaaactaaatcttgtttattttt |
1599731 |
T |
|
| Q |
401 |
attttgtactcttaagctaccttcatatataattcaagtcaagaaaggattcaataggtatcttgcataacaagttaacaactttcacataacaaaacac |
500 |
Q |
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| T |
1599732 |
attttgtactcttaagctaccttcatatataattgaagtcaagaaagtattcaataggtatcttgcataacaagttaacaactttcacataacaaaacac |
1599831 |
T |
|
| Q |
501 |
cttacttcaacagagactactactattttactattgaaaacgtta-tttaagtaacgaaacgaaaaaggcttcagaaaatttaaagagaaccaaatcaca |
599 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1599832 |
cttacttcaacaaagactactactattttactattgaaaacgttattttaagtaaagaaacgaaaaaggcttcagaaaattt-aagagaaccaaatcaca |
1599930 |
T |
|
| Q |
600 |
ccctccagcagaagtagaaatcaggcttccattctgagactgcaggaatatgactagcatcacctcaccatctcatccaatgtcttgtaaagttg |
694 |
Q |
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| T |
1599931 |
ccctccagcagaagaagaaatcaggcttccattctgagactgcaggaatatgactagcctcacctcaccatctcatccaatgtcttgtaaagttg |
1600025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 650
Target Start/End: Complemental strand, 5769071 - 5769010
Alignment:
| Q |
589 |
accaaatcacaccctccagcagaagtagaaatcaggcttccattctgagactgcaggaatat |
650 |
Q |
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| T |
5769071 |
accaaatcacaccttccagcagaagaagaaatcaggtatccattcctagactccagaaatat |
5769010 |
T |
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