View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16450_low_3 (Length: 694)
Name: NF16450_low_3
Description: NF16450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16450_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 362 - 685
Target Start/End: Original strand, 6022819 - 6023142
Alignment:
| Q |
362 |
tatgcatgcaggtggaagacttcactattcagcgattgtgccttccacaggtgatcactgccgtcaatggaaccttaccaggaccaacaattaatgctcg |
461 |
Q |
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| T |
6022819 |
tatgcatgcaggtggaagacttcactattcagcgattgtgccttccacaggtgatcactgccgtcaatggaaccttaccaggaccaacaattaatgctcg |
6022918 |
T |
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| Q |
462 |
agagggtgacactgttatcattcatgtgttcaacaaatcaccctataatcttactcttcattggtaacatatttctctccttaccttcaataacaatatt |
561 |
Q |
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| T |
6022919 |
agagggtgacactgttatcattcatgtattcaacaaatcaccctataatcttactcttcattggtaacatatttctctccttaccttcaataacaatatt |
6023018 |
T |
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| Q |
562 |
agagaaatatattaagcaagcacaccatggtttgaattcaagaactaatattattgactagtccacctgttaaatgtttcttatatttttatattttatt |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
6023019 |
agagaaatatattaagcaagcacaccatggtttgaattcaagaactaatattattgactagtcctcctgttaaacgtttcttatatttttatattttatt |
6023118 |
T |
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| Q |
662 |
acacatccatgcatgtagtataat |
685 |
Q |
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| T |
6023119 |
acacatccatgcatgtagtataat |
6023142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 6022575 - 6022726
Alignment:
| Q |
106 |
cactattagattgtcttctacctttgcaaaagaaaatagattggtttcttgcttacannnnnnnnnnnnncaaattttgtataaaaaac-tattgaacca |
204 |
Q |
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| T |
6022575 |
cactattagattgtcttctacctttgcaaaagaaaatagattgttttcttgcatacatttttttttctttcaaattttgtataaaaaaaatattgaacca |
6022674 |
T |
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| Q |
205 |
acttgttttaaagttttctttacaaaatatttgaaaacatgaagaagaagaa |
256 |
Q |
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| T |
6022675 |
acttgttttaaagttttctgtacaaaatatttgaaagcatgaagaagaagaa |
6022726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 6022730 - 6022773
Alignment:
| Q |
313 |
gatatttatttcatttcattatatgttaataaactttataatat |
356 |
Q |
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| T |
6022730 |
gatatttatttcatttcatcatatgttattaaactttataatat |
6022773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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