View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16450_low_4 (Length: 327)
Name: NF16450_low_4
Description: NF16450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16450_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 11660428 - 11660125
Alignment:
| Q |
18 |
ataatctatttgtaccttgtgattgttggcattctccaatacaagatgaatttgagcatgttgtataaggctttcacttcctgtttatagaagcaagatt |
117 |
Q |
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| T |
11660428 |
ataatctatttgtaccttgtgattgttggcattctccaatacaagatgaatttgagcacgttgtataaggctttcacttcctgattatagaagcaagatt |
11660329 |
T |
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| Q |
118 |
ttgttaaggtaaaataataatatcaagaagaaattaacaa-taagtttttaaagaatcgaagtttaaattatgatatagttgaatttacttgtaattgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11660328 |
ttgttaaggtaaaataataatatcaagaagaaattaacaattaagtttttaaagaaacgaagtttaaattatgatatagttgaatttacttgtaattgga |
11660229 |
T |
|
| Q |
217 |
actgctttgaagcatacaagatgggaaagccctnnnnnnntcacaaacaggtgaaaaatattgcctttcattcttgtcacttagatttcttatgtttctt |
316 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11660228 |
actgctttgaagcatacaagatgggaaagccctaaaaaaatgacaaacaggtgaaaaatattgcctttcattcttgtcacttagatttcttatgtttctt |
11660129 |
T |
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| Q |
317 |
ctca |
320 |
Q |
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|||| |
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| T |
11660128 |
ctca |
11660125 |
T |
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