View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16451_high_13 (Length: 241)
Name: NF16451_high_13
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16451_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8357599 - 8357375
Alignment:
| Q |
1 |
atactcggtgagattaatgcatataggaggaagagatgttgaacaagaggtagagagtcctttggtgctgattgtcttctcaaattgcacttgtgctttg |
100 |
Q |
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| T |
8357599 |
atactcggtgagattaatgcatataggaggaagagatgttgaacaagaggtagagagtcttttggtgctgattgtcttctcaaattgcacttttgctttg |
8357500 |
T |
|
| Q |
101 |
ttgcatatttcaatataagactttgttctaaatgcttcaaaatattcttcatttacatttgacttcctacacaagctatcatccttatgacattgtttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357499 |
ttgcatatttcaatataagactttgttctaaatgcttcaaaatattcttcatttacatttgacttcctacacaagctatcatccttatgacattgtttcc |
8357400 |
T |
|
| Q |
201 |
gtgatctacctgcttaatttatttc |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
8357399 |
gtgatctacctgcttaatttatttc |
8357375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 28593988 - 28594209
Alignment:
| Q |
3 |
actcggtgagattaatgcatataggaggaagag------atgttgaacaagaggtagagagtcctttggtgctgattgtcttctcaaattgcacttgtgc |
96 |
Q |
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||||||||||||| | ||||||||||||||||| ||||||||||||| | |||||||| ||||||| ||||||||||| |||||||| ||||||| |
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| T |
28593988 |
actcggtgagattcaggcatataggaggaagaggagaagatgttgaacaagatgaagagagtcttttggtgttgattgtcttcccaaattgcccttgtgc |
28594087 |
T |
|
| Q |
97 |
tttgttgcatatttcaatataagactttgttctaaatgcttcaaaatattcttcatttacatttgacttcctacacaagctatcatccttatgacattgt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||| |||| |||||||||| || ||||||| | |||| |
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| T |
28594088 |
tttgttgcatatttcaatataagactttgttctaaatgtttccagatattcttcatttacgtttggcttcttacacaagctttcttccttatcaagttgt |
28594187 |
T |
|
| Q |
197 |
ttccgtgatctacctgcttaat |
218 |
Q |
| |
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||||||||||||||||| |||| |
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|
| T |
28594188 |
ttccgtgatctacctgcataat |
28594209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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