View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16451_high_6 (Length: 501)

Name: NF16451_high_6
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16451_high_6
NF16451_high_6
[»] chr3 (4 HSPs)
chr3 (1-484)||(32249662-32250145)
chr3 (1-374)||(32184502-32184871)
chr3 (160-463)||(32190205-32190498)
chr3 (160-463)||(32192368-32192660)
[»] chr7 (3 HSPs)
chr7 (16-484)||(8844202-8844667)
chr7 (1-482)||(8823186-8823664)
chr7 (1-484)||(8808313-8808789)
[»] chr1 (1 HSPs)
chr1 (2-484)||(36375326-36375802)
[»] chr5 (1 HSPs)
chr5 (12-193)||(35959457-35959638)
[»] scaffold0061 (2 HSPs)
scaffold0061 (81-181)||(66274-66374)
scaffold0061 (40-180)||(66129-66269)
[»] scaffold0017 (2 HSPs)
scaffold0017 (81-181)||(132258-132358)
scaffold0017 (40-180)||(132363-132503)


Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 32250145 - 32249662
Alignment:
Q  1 tggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32250145 tggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaact 32250046  T
Q  101 tccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatttgttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32250045 tccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatttgttcat 32249946  T
Q  201 gaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgaggcgcgcgcgagaaaattctttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32249945 gaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgaggcgcgcgcgagaaaattctttt 32249846  T
Q  301 tgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatcacttccagttttattgatgtgta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32249845 tgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatcacttccagttttattgatgtgta 32249746  T
Q  401 cgacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagcatgagat 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32249745 cgacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagcatgagat 32249662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 32184502 - 32184871
Alignment:
Q  1 tggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaact 100  Q
    |||||||| | || ||||||| ||||| |||||||||||||||| |||| |||| || | ||||||||||||||||| ||||||||| ||||||||||||    
T  32184502 tggctaaaacgttaagagaaatccctgaaatcttgatacttgataaaggccacagtcatcgaagcactaaatcaaggttgaggaaatatttaatgaaact 32184601  T
Q  101 tccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatttgttcat 200  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||    
T  32184602 tccaacagaattgagaatattactttctggcacattgttttagaacaatttctgtgaatatttccacacactttgtttaggtagaccgaaatatgttgat 32184701  T
Q  201 gaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgaggcgcgcgcgagaaaattctttt 300  Q
    ||||||||||||||||||||||||||||||  |||||||   ||| | |||| ||| |||  ||  ||||| ||  |||| |  ||||| |||||||| |    
T  32184702 gaagttctacaagagttagattctaaatacataaggaaa---ggatacatagagaataaatcacaacattttctcaaggcaccagcgaggaaattcttct 32184798  T
Q  301 tgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaa 374  Q
    || ||||||||| ||||||||||||| |  ||| | ||||||  || ||||||||| ||||||||||| |||||    
T  32184799 tggacaacattgcaaagaaaattaacgcaaata-tcatgagggaaaaatgcagggtgtatatgtgctgtgaaaa 32184871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 160 - 463
Target Start/End: Complemental strand, 32190498 - 32190205
Alignment:
Q  160 atttcaacacactttgtttagctagaccgaaatttgttcatgaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaa 259  Q
    |||||||||||| |||||||||||||  ||||||||||||| ||||||||||||||||||| ||||| |||   ||||   |||| ||||||  ||| ||    
T  32190498 atttcaacacacattgtttagctagaaggaaatttgttcataaagttctacaagagttagactctaagtac---agga---gtggtaaaataatgaaaaa 32190405  T
Q  260 agaacgtcatttgcttgaggcgcgcgcgagaaaattctttttgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtcta 359  Q
    ||  |  |||||||| |||   || ||||| |||||| |   | ||||  ||| ||||||| ||||||| |||||||||||||| || ||| ||||| ||    
T  32190404 agcgcagcatttgctcgagaaacgggcgaggaaattcgt---ggacaat-ttgcaaagaaatttaactcagatattgatgaggaaaaaatgaagggtata 32190309  T
Q  360 tatgtgctgcgaaaaatcacttccagttttattgatgtgtacgacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatga 459  Q
    |||||||||||||||||||||    |||| || ||||| || |||||||||||||||||||| |||||||| ||||||||||| || ||| |||||||||    
T  32190308 tatgtgctgcgaaaaatcactagtcgtttcatcgatgtttatgacagtggaaattcttctgatactcttccaggtttacaaatctaaacactgctcatga 32190209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 160 - 463
Target Start/End: Original strand, 32192368 - 32192660
Alignment:
Q  160 atttcaacacactttgtttagctagaccgaaatttgttcatgaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaa 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||   ||||   | |||||||||| ||||||    
T  32192368 atttcaacacactttgtttagcttgaccgaaatttgttcatgaagttctacaagagttaaattctaattac---agga---gaggaaaaatagagaagaa 32192461  T
Q  260 agaacgtcatttgcttgaggcgcgcgcgagaaaattctttttgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtcta 359  Q
     |  |  ||||| || |||  ||| ||||| |||||||| ||| |||| |||| ||||||||| ||||| |||||||||||||| || ||| ||||||      
T  32192462 tgcgcagcattttctcgagatgcgggcgaggaaattcttcttggacaatattgcaaagaaaataaactcagatattgatgaggaaaaaatg-agggtc-- 32192558  T
Q  360 tatgtgctgcgaaaaatcacttccagttttattgatgtgtacgacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatga 459  Q
     |||| ||| |||| |||| |  | |||| |||||| | || |||||||||||||||| ||| ||||||||  |||||||||| || | | |||||||||    
T  32192559 catgtcctgtgaaatatca-tagcggtttcattgatctttatgacagtggaaattcttatgatactcttcc-agtttacaaatctaaatactgctcatga 32192656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 8844667 - 8844202
Alignment:
Q  16 gagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaacttccaacagaattgag 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||    
T  8844667 gagaaagccctggaatcttgatacttgatgaaggtcacaatcctagaagcacaaaatcaaggttgaggaaatgcttaatggaacttccaacagaattgag 8844568  T
Q  116 aatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatttgttcatgaagttctacaagag 215  Q
     ||||| || |||||||| |||||||||||||||||| ||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||| ||||    
T  8844567 gatattactttctggcactttgtttcagaacaatttcggtgaatatttcaatacactgtgtttagcaagaccaaaatttgttcacgaagtgctacgagag 8844468  T
Q  216 ttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgaggcgcgcgcgagaaaattctttttgaacaacattgaaa 315  Q
    |||||||||||||||  ||||| ||||   || | || ||||||||  |  ||||||||||||||||| ||||| |||||||| ||| |||||||||  |    
T  8844467 ttagattctaaatacttaaggagaggt---aacagagagaagaaagcgcagcatttgcttgaggcgcgggcgaggaaattcttcttggacaacattgcta 8844371  T
Q  316 agaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatcacttccagttttattgatgtgtacgacagtggaaattc 415  Q
     |||||||||||| ||||  ||||| || || |||||||||||| ||||||||||||| |||||   |||||| || || || || || |||||||||||    
T  8844370 ggaaaattaactcagataacgatgaagaaaaaatgcagggtctacatgtgctgcgaaagatcacaagcagtttcatcgacgtttatgaaagtggaaattc 8844271  T
Q  416 ttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagcatgagat 484  Q
     ||||| || |||||||||||||||||||||||| ||||||||||||| | ||| ||||||| ||||||    
T  8844270 ctctgatacacttcctggtttacaaatatatacactgctcatgaatacatacgatgaacagcttgagat 8844202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 8823186 - 8823664
Alignment:
Q  1 tggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaact 100  Q
    |||||||| |||||||||||| ||||||||||||||||||||| ||||   | |||||||||||||||||||||||| | | |||||| |||||| ||||    
T  8823186 tggctaaaacattgagagaaatccctggaatcttgatacttgacgaagcttataatcctagaagcactaaatcaaggttaaagaaatgcttaatggaact 8823285  T
Q  101 tccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatttgttcat 200  Q
    ||||| |||||| |||| ||| || ||||||||  | |||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||     
T  8823286 tccaatagaattaagaaaattactttctggcactctttttcagaacaatttttgtgaatatttcaacacaccttgtttagcaagaccaaaatttgttcac 8823385  T
Q  201 gaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgaggcgcgcgcgagaaaattctttt 300  Q
    ||||| |||| ||||||||||| |||||||   |||| ||||    |   || ||| ||||  |  ||||| |||||||||||  | || | ||||||      
T  8823386 gaagtgctacgagagttagattttaaatacttgaggagaggt---tatggagagaataaagcgcaacattttcttgaggcgcgaccaaggagattcttca 8823482  T
Q  301 tgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatcacttccagttttattgatgtgta 400  Q
    || | |||||||  | ||||||||||||  | | ||||||||| || ||||||||||||  |||||||| ||| |||||   |||||| || || || ||    
T  8823483 tggaaaacattgctaggaaaattaactcacacaatgatgaggaaaaaatgcagggtctacctgtgctgcaaaagatcacgagcagtttcatcgacgttta 8823582  T
Q  401 cgacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagcatgag 482  Q
     || ||||||||||||||||| || | ||||||||||||||| |||||| || ||| ||||||||  || ||||| ||||||    
T  8823583 tgaaagtggaaattcttctgatacacctcctggtttacaaatttatacactggtcaggaatacgtatgatgaacaacatgag 8823664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 8808789 - 8808313
Alignment:
Q  1 tggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaact 100  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||  || ||||||||||||||||| |||||| ||| | ||||||||||  ||||    
T  8808789 tggctaaaacattgagagaaagccctggaatctttatacttgacgaagctcataatcctagaagcactaa-tcaaggttgaagtaatgtttaatagaact 8808691  T
Q  101 tccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatttgttcat 200  Q
    || |||| |||| ||||||||  | ||||||||  | ||||||||||| || |||||||||||||| |||||||||||||   |||| |||||||||||     
T  8808690 tctaacataattaagaatattaatttctggcactctttttcagaacaaattatgtgaatatttcaatacactttgtttagtatgaccaaaatttgttcac 8808591  T
Q  201 gaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgaggcgcgcgcgagaaaattctttt 300  Q
     |||| | || |||||||||||||||||||   |||| ||||   ||   || |||||||| || ||||||||| ||||||||  | || ||||||||      
T  8808590 aaagtgcgacgagagttagattctaaatacttgaggagaggt---aatggagagaagaaagcacatcatttgctagaggcgcggccaaggaaattcttca 8808494  T
Q  301 tgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatcacttccagttttattgatgtgta 400  Q
    || | |||||||  | ||||||||||||  | |   ||||||| || ||||||||||||  ||| ||| |||| |||||    |||||  | || || ||    
T  8808493 tggaaaacattgctaggaaaattaactcacaca---atgaggaaaaaatgcagggtctacctgtcctgtgaaagatcacgagaagtttcctcgacgttta 8808397  T
Q  401 cgacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagcatgagat 484  Q
     || ||||||||||||||||| || | ||||||||||| ||| ||||||||||| | ||||| ||| ||  || ||||||||||    
T  8808396 tgaaagtggaaattcttctgatacacctcctggtttacgaatctatacattgcttaggaatatgtctgattaatagcatgagat 8808313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 2 - 484
Target Start/End: Original strand, 36375326 - 36375802
Alignment:
Q  2 ggctaaagcattgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaactt 101  Q
    ||||||||||||||| ||||| || ||| |||||||||||||||| ||||||||||||||||| || | ||||| | ||||||| || |||||| | ||     
T  36375326 ggctaaagcattgagggaaagtcccggactcttgatacttgatgagggacacaatcctagaagtaccacatcaaagttgaggaagtgcttaatggatcta 36375425  T
Q  102 ccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatttgttcatg 201  Q
    ||| ||| ||||||||| || || |||||||| |||||||| ||||||||  | ||||| |||||||| || |||||||| ||||| |||||| |||| |    
T  36375426 ccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacactctctgtttagccagaccaaaatttattcacg 36375525  T
Q  202 aagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgaggcgcgcgcgagaaaattcttttt 301  Q
    |||||||  |||||||||||||||| ||| |||      | || ||| ||| | || |||  | |||||| || ||||| ||||||||||||||||| ||    
T  36375526 aagttctggaagagttagattctaagtacagaa------gaggcaaactagaggaggaagtgcctcatttactagaggcacgcgcgagaaaattcttctt 36375619  T
Q  302 gaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatcacttccagttttattgatgtgtac 401  Q
    | | |||||||||||||||||||||||  ||||||||| ||| || ||| ||||| || ||||||| |||||||||||     ||||||| ||||| ||     
T  36375620 ggagaacattgaaaagaaaattaactcaaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatgtttat 36375719  T
Q  402 gacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagcatgagat 484  Q
    ||| |||||| ||||||||| |||||||| ||||| ||||| |||||||||||| ||||| | ||||| ||||| || |||||    
T  36375720 gacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacgagat 36375802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 35959638 - 35959457
Alignment:
Q  12 ttgagagaaagccctggaatcttgatacttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaacttccaacagaat 111  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||||| || ||||||||| || | |||||||| |||||| | | ||| ||||    
T  35959638 ttgagggaaagtcctggactcttggtacttgatgaaggtcacaaccctagaagtaccaaatcaaggttgcgaaaatgtttgatgaaagtgcaaaccgaat 35959539  T
Q  112 tgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttagctagaccgaaatt 193  Q
    ||||||||||||| || || || |||||||| || |||||||| ||||| |||||||| || || || || |||||||||||    
T  35959538 tgagaatattgctttccggtactttgtttcaaaataatttctgcgaatacttcaacactctatgcttggcaagaccgaaatt 35959457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 66374 - 66274
Alignment:
Q  81 aggaaatgtttaatgaaacttccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttag 180  Q
    |||||||||||  ||  |||||||| | |||||| ||| || || ||||||||| ||||||| |||||||| |||||| | ||||| |||| ||||||||    
T  66374 aggaaatgttttgtggtacttccaaaataattgataatcttactttctggcacaatgtttcaaaacaatttttgtgaaaaattcaatacacattgtttag 66275  T
Q  181 c 181  Q
    |    
T  66274 c 66274  T

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Target: scaffold0061; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 180
Target Start/End: Original strand, 66129 - 66269
Alignment:
Q  40 ttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaacttccaacagaattgagaatattgctctctggcacattgtt 139  Q
    ||||||| ||| ||||| ||||||||| ||||||| |  | |||||||||||| || ||||||||| | ||||   |||||| || ||| ||||| ||||    
T  66129 ttgatgatggaaacaattctagaagcattaaatcatgcttcaggaaatgtttagtggaacttccaatataattagtaatattactttctagcacactgtt 66228  T
Q  140 tcagaacaatttctgtgaatatttcaacacactttgtttag 180  Q
    ||  | |||||| | | |||||| || |||||||| |||||    
T  66229 tcgaagcaatttttataaatattacagcacactttatttag 66269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 132258 - 132358
Alignment:
Q  81 aggaaatgtttaatgaaacttccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgtttag 180  Q
    |||||||||||  ||  |||||||| | |||||| ||| || || ||||||||| ||||||| |||||||| |||||| | ||||| |||| ||||||||    
T  132258 aggaaatgttttgtggtacttccaaaataattgataatcttactttctggcacaatgtttcaaaacaatttttgtgaaaaattcaatacacattgtttag 132357  T
Q  181 c 181  Q
    |    
T  132358 c 132358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 132503 - 132363
Alignment:
Q  40 ttgatgaaggacacaatcctagaagcactaaatcaaggctgaggaaatgtttaatgaaacttccaacagaattgagaatattgctctctggcacattgtt 139  Q
    ||||||| ||| ||||| ||||||||| ||||||| |  | |||||||||||| || ||||||||| | ||||   |||||| || ||| ||||| ||||    
T  132503 ttgatgatggaaacaattctagaagcattaaatcatgcttcaggaaatgtttagtggaacttccaatataattagtaatattactttctagcacactgtt 132404  T
Q  140 tcagaacaatttctgtgaatatttcaacacactttgtttag 180  Q
    ||  | |||||| | | |||||| || |||||||| |||||    
T  132403 tcgaagcaatttttataaatattacagcacactttatttag 132363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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