View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16451_high_9 (Length: 353)
Name: NF16451_high_9
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16451_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 37 - 231
Target Start/End: Complemental strand, 25152893 - 25152703
Alignment:
| Q |
37 |
ggttggtcttttagagaacagagaaatttcctatcaatacctttgtaagaattggtttgattaatagaaggannnnnnnatcttacttgagcctatttta |
136 |
Q |
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| T |
25152893 |
ggttggtctttctgagaacagagatatttcctatcaattc-tttgtaagaattggtttgattaatataaggtttgatttatcttacttgagc-tatttta |
25152796 |
T |
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| Q |
137 |
tatgcatgcatatatgaatttataaacatattagtgttagggcatattaaatttcaac-aattgaattactataaatgtagtggttaataattgaa |
231 |
Q |
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| T |
25152795 |
tatgcatgtatatatgaatttataaacattaaagtgttagggcatgttaaatttcaacaaaatgaattactataaat---gtggttaataattgaa |
25152703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 25152687 - 25152639
Alignment:
| Q |
286 |
aaccaacaaataattgagatacttaatatctatgtttgcagaaaccaat |
334 |
Q |
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| T |
25152687 |
aaccaacaaataattgagatacttaatatctatgtttgcataaaccaat |
25152639 |
T |
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