View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16451_low_1 (Length: 664)
Name: NF16451_low_1
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16451_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 95 - 653
Target Start/End: Original strand, 43568473 - 43569037
Alignment:
| Q |
95 |
ctatcagcatcatcatctccaattcaaacccaagacaacaagaatcactttcccttacaaaccaaaatgccaa------caacaaaaacaacccaaatcc |
188 |
Q |
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| T |
43568473 |
ctatcagcatcatcatctccaattcaaaccgaagacaacaagaatcactttcccttacaaaccaaaatgccaacaccaacaacaaaaacaacccaaatcc |
43568572 |
T |
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| Q |
189 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgtgttctagaagtttctagaaaagccgacc |
288 |
Q |
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| T |
43568573 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgtgttctagaagtttctagaaaagccgacc |
43568672 |
T |
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| Q |
289 |
acccattccgcggttcccgccttctcctccttgataatcctggaaacatccacagcatttctttccttttcaaaaccctaacagacacttacttcggcgt |
388 |
Q |
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| T |
43568673 |
acccattccgcggttcccgccttctcctccttgataatcctggaaacatccacagcatttccttcctattcaaaaccctaacagacacttacttcgacgt |
43568772 |
T |
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| Q |
389 |
cttcgcaacactcccgccaatcataccgccaggacccattgctgttcttggctttggtgccggctctactgccagtatcatccttaagttttaccccaat |
488 |
Q |
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| T |
43568773 |
cttcgcaacactcccgccaatcataccgccaggacccattgctgttcttggctttggtgccggctctactgccagtatcatccttaagttttaccccaat |
43568872 |
T |
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| Q |
489 |
gcggttgtccatggctgggaacttgatacttctgtaattgatgttgcccgagagtttttcaatcttgacaagattgaaagagagaataaaaatagacttt |
588 |
Q |
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| T |
43568873 |
gcggttgtccatggctgggaacttgatacttctgtaattgatgttgcccgagagtttttcaatcttgacaagattgaaagagagaataaaaatagacttt |
43568972 |
T |
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| Q |
589 |
ttgtttatgttggaaatgctttaacagcgagtttgttaggtgggttttcaggcattattgatgat |
653 |
Q |
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| T |
43568973 |
ttgtttatgttggaaatgctttaacagcgagtttggtaggtgggttttcaggcattattgttgat |
43569037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 43568407 - 43568437
Alignment:
| Q |
23 |
aagaatgtggatggtcctatctccctctctt |
53 |
Q |
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| T |
43568407 |
aagaatgtggatggtcctatctccctctctt |
43568437 |
T |
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