View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16451_low_13 (Length: 248)
Name: NF16451_low_13
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16451_low_13 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 33021883 - 33022112
Alignment:
| Q |
19 |
atggcactttacatattcagtatatcatttctttggtcacattccttgtggaaacttcaatatttgaaagcataaatgatgtttctagttctgtcaatag |
118 |
Q |
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| T |
33021883 |
atggcactttacatcttcagtatgtaatttctttttttacattccttgtggaaacttcaatatttgaaagcataaatggtgtttttagttctgtcaaaag |
33021982 |
T |
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| Q |
119 |
ttgatatatatatagacaaatatatgtgctttcacagtaaggttggtagggttgtgttggatttgattggtggtttgcttttatggcattggttacttga |
218 |
Q |
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| T |
33021983 |
gtgatatatatattgacaaatatatgtgctttcgcagtcgggtcggtagggttgtgttggatttgattggcagtttgcttttctggcattggtgacttga |
33022082 |
T |
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| Q |
219 |
ttctattctaggtctgttgagatttgctgg |
248 |
Q |
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| T |
33022083 |
ttctattctaggtctattgagatttgctgg |
33022112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 33028192 - 33028297
Alignment:
| Q |
16 |
aatatggcactttacatattcagtatatcatttctttggtcacattccttgtggaaacttcaatatttgaaagcataaatgatgtttctagttctgtcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
33028192 |
aatatggcactttacatattcagtatatcatttctttggtcacattccttgtggaaacttcaatattttaaagcataaatggtgtttctagttctgtcaa |
33028291 |
T |
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| Q |
116 |
tagttg |
121 |
Q |
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| T |
33028292 |
tagttg |
33028297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 33028294 - 33028382
Alignment:
| Q |
160 |
gttggtagggttgtgttggatttgattggtggtttgcttttatggcattggttacttgattctattctaggtctgttgagatttgctgg |
248 |
Q |
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| T |
33028294 |
gttggtagggttgtgttggatttgattggcggtttgcttttacggcattggttaattgattctattctaggtctgttgagatttgctgg |
33028382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 33039517 - 33039560
Alignment:
| Q |
19 |
atggcactttacatattcagtatatcatttctttggtcacattc |
62 |
Q |
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| T |
33039517 |
atggcactttacaaattcagtatgtcatttctttggtcacattc |
33039560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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