View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16451_low_2 (Length: 540)
Name: NF16451_low_2
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16451_low_2 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 205 - 530
Target Start/End: Complemental strand, 21265148 - 21264823
Alignment:
| Q |
205 |
tagaatcaaagataaagaaatttgctcccacgcgacgcgcgggtcttattctagttttatttataaatccaattattgaattaatgtacctgcgctacga |
304 |
Q |
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|||||| |||||||||||||||||||||| ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21265148 |
tagaatgaaagataaagaaatttgctcccccgcaacacgcgggttctattatagttttatttataaatccaattattgaattaatgtaccttcgctacga |
21265049 |
T |
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| Q |
305 |
catacggtaactgtttattttcagctcaaatagtcctacaataattttatcacttactattctcattttggactctcgtaagatcaaggcatgatttccc |
404 |
Q |
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| T |
21265048 |
catacagtaactgtttattttcagctcaaatagtcctacaataattttatcacttgctattctcattttggactctcataagatcaaggcatgatttccc |
21264949 |
T |
|
| Q |
405 |
ttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactgcaagtgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacct |
504 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264948 |
ttgtagcttgcgtgaaaagaatgctttgtagtaatcttccactgtaagtgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacct |
21264849 |
T |
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| Q |
505 |
ataactttgctcatttgaggtctgtg |
530 |
Q |
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| T |
21264848 |
ataactttgctcatttgaggtctgtg |
21264823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 363 - 530
Target Start/End: Complemental strand, 22929591 - 22929424
Alignment:
| Q |
363 |
attctcattttggactctcgtaagatcaaggcatgatttcccttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactgcaagtgttttgaac |
462 |
Q |
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| T |
22929591 |
attctcattttggattctcataatatcaaggcatgactttccttgtagcttacgtgaaaagaatgctttgtagtaatcttccacagtaagttttttgaat |
22929492 |
T |
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| Q |
463 |
aatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttgaggtctgtg |
530 |
Q |
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| T |
22929491 |
aatgcaggcctttcaggagtaacaagtgttggtgttggacctataactttgcttatttgaggtctgtg |
22929424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 334 - 530
Target Start/End: Original strand, 23021424 - 23021620
Alignment:
| Q |
334 |
atagtcctacaataattttatcacttactattctcattttggactctcgtaagatcaaggcatgatttcccttgtagcttgcgtgaaaagaaggctttgt |
433 |
Q |
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||||||||| ||| ||||||||||| ||||| || ||||| | |||| |||||||||| ||||||||||| ||||||| ||||||||| | |||||| |
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| T |
23021424 |
atagtcctatgatacttttatcacttcctattatctttttgaattctcataagatcaagacatgatttcccctgtagctggcgtgaaaatattactttgt |
23021523 |
T |
|
| Q |
434 |
agtaatcttccactgcaagtgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttgaggtctgtg |
530 |
Q |
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| T |
23021524 |
agtaatcttcaacggtaagtgttttgaacaatgcaggtctttcaggggtaacaagtcttggtgttggacctataacggtgctcatttgaggtctgtg |
23021620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 21265789 - 21265703
Alignment:
| Q |
19 |
actagatgctgggcagcttctaccatccttagacggaattatagtgagttaaaaatgtacatgtccactacaaatatactagaataa |
105 |
Q |
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| T |
21265789 |
actagatgttgggcagcttctaccatccttagagggaattatagtgagttaaaaatgtgcatgtccactacaaatatactagaataa |
21265703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 21265679 - 21265604
Alignment:
| Q |
104 |
aacaaggtacgtatctctgtgcgtaacttcgaggctaatctctaaaaccatgttatatcctgttctaccacaatgg |
179 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
21265679 |
aacaaggtacgtatctctgtgcctaacttcgaggctaatctctaaaaccatgttatgtactgttctaccacaatgg |
21265604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 22981423 - 22981492
Alignment:
| Q |
453 |
tgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttga |
522 |
Q |
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| T |
22981423 |
tgttttgaacaatgcaggtctttcagctgtaataaggcttggtgttggacctataacactgctcatttga |
22981492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 349 - 530
Target Start/End: Original strand, 22340 - 22521
Alignment:
| Q |
349 |
ttttatcacttactattctcattttggactctcgtaagatcaaggcatgatttcccttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactg |
448 |
Q |
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|||| ||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |
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| T |
22340 |
ttttgtcacttactattctcgttttggattctcataagatcaatgcatgatttcccttgtagcttgcgtgaaaagaatgctttgtagtaatcttctacag |
22439 |
T |
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| Q |
449 |
caagtgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttgaggtctgtg |
530 |
Q |
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| T |
22440 |
taattgttttgaacaatgcaggcctttcaggagtaacaagtttttgtgttggacctataactttgctcatctgaggtctgtg |
22521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 42260274 - 42260346
Alignment:
| Q |
194 |
tcacatgataatagaatcaaagataaagaaatttgctcccacgcgacgcgcgggtcttattctagttttattt |
266 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| | ||| ||| ||||||| | ||||||||| |||| |
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| T |
42260274 |
tcacataataatagaatcaaagatcaagaaatttgctcacgcgcaacgtgcgggtcctgttctagtttaattt |
42260346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 507
Target Start/End: Complemental strand, 10003 - 9891
Alignment:
| Q |
395 |
atgatttcccttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactgcaagtgttttgaacaatgcaggcctttcaagagtaacaagactttg |
494 |
Q |
| |
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||||||||||||||| ||||| ||||| | ||||| |||||||| | | |||| |||||||||||||||||| |||||| |||| ||||| || | |
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| T |
10003 |
atgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagcaattgttttgaacaatgcaggactttcaggagtcacaaggctggg |
9904 |
T |
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| Q |
495 |
tgttggacctata |
507 |
Q |
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|||||| |||||| |
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| T |
9903 |
tgttgggcctata |
9891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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