View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16451_low_3 (Length: 520)
Name: NF16451_low_3
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16451_low_3 |
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| [»] chr7 (5 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 10 - 520
Target Start/End: Complemental strand, 30099251 - 30098741
Alignment:
| Q |
10 |
acatcatcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttccc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099251 |
acatcatcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttccc |
30099152 |
T |
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| Q |
110 |
aaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccattaacatagttacctac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099151 |
aaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttggcataaccaaaataagaagctccattaacatagttacctac |
30099052 |
T |
|
| Q |
210 |
aagttcaaagcagacagttcgattggtaagctcagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099051 |
aagttcaaagcagacagttcgattggtaagctcagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttact |
30098952 |
T |
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| Q |
310 |
aacatttgtctccaaccacnnnnnnnntagttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattg |
409 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30098951 |
aacatttgtctccaacaacaaaaaaaatagttacctgcaacagttgatgatgtgtgagttccatgccctatagtgtctctagctgagttcatgctgattg |
30098852 |
T |
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| Q |
410 |
taacatttggatttgaagcaatcacacctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcaca |
509 |
Q |
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| T |
30098851 |
taacatttggatttgaagcaatcacacctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcaca |
30098752 |
T |
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| Q |
510 |
tgttcctttcc |
520 |
Q |
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||||||||||| |
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| T |
30098751 |
tgttcctttcc |
30098741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 30091666 - 30091914
Alignment:
| Q |
14 |
catcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaat |
113 |
Q |
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||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| || ||| |||||||||||||||| |
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| T |
30091666 |
catcaaatcccatagaaattgaaatcacatcaacaccatcagcaatagcttggtccattccagctaaaacatcagaagccaaaagaccctcttcccaaat |
30091765 |
T |
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| Q |
114 |
gactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccattaacatagttacctacaagt |
213 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||| |
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| T |
30091766 |
gactttgtacatagcaagcctagctcttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagttacct-gaagt |
30091864 |
T |
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| Q |
214 |
tcaaagcagacagttcgattggtaagctcagagacaccgaatgagtacta |
263 |
Q |
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| |||||||||| |||||| ||||||| |||| || ||| |||||||| |
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| T |
30091865 |
ccgaagcagacagctcgattagtaagctgagagttacagaaggagtacta |
30091914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 337 - 520
Target Start/End: Original strand, 30091942 - 30092125
Alignment:
| Q |
337 |
tagttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacac |
436 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
30091942 |
tagttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacatttggatttgaagcaatcacac |
30092041 |
T |
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| Q |
437 |
ctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttcc |
520 |
Q |
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| T |
30092042 |
ctttgttgaaagatctagctccaatcagtttgaagttgcacatggaggcattgaatttatggccagtttcacatgttcctttcc |
30092125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 30087686 - 30087879
Alignment:
| Q |
14 |
catcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaat |
113 |
Q |
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|||||| ||| || |||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || | | | ||||||||||||| |
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| T |
30087686 |
catcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtccattccagctaaaacatcagaagccataacatcctcttcccaaat |
30087785 |
T |
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| Q |
114 |
gactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccattaacatagttacct |
207 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
30087786 |
gactttgtacatagcaatcttagcttttggtgcaatgcctcttgctactcctttagcatagccaaaataagaagctccgttgacatagttacct |
30087879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 338 - 520
Target Start/End: Original strand, 30087982 - 30088167
Alignment:
| Q |
338 |
agttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttgga---tttgaagcaatcac |
434 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||| || || |||||||| |
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| T |
30087982 |
agttacctgcaacagttgatgatgtatgagttccatgtccgatactgtctctagctgagttcttgctgattccaacatttcgatagttacctgcaatcac |
30088081 |
T |
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| Q |
435 |
acctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttcc |
520 |
Q |
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| T |
30088082 |
acctttattgaaagatcttgctccaatcagtttgaagttgcacacggaggcattgaatttatggccagtttcacatgttcctttcc |
30088167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 352 - 520
Target Start/End: Original strand, 35171586 - 35171754
Alignment:
| Q |
352 |
gttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaatatc |
451 |
Q |
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||||||||||||||| | ||||||||| |||||||||||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||||| |
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| T |
35171586 |
gttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatc |
35171685 |
T |
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| Q |
452 |
tagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttcc |
520 |
Q |
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|||||||||| ||||| ||||||||||| || || ||||| ||||| || | || |||| ||||||||| |
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| T |
35171686 |
tagctccaattaatttcaagttacacatagaagtgttgaaatcttgtcctgcttgacattttcctttcc |
35171754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 35171429 - 35171551
Alignment:
| Q |
57 |
aatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctctt |
156 |
Q |
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||||||||| ||||| || || | ||||||||| || | |||||| || ||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| |
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| T |
35171429 |
aatagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctagcttttggtgcaatacctcta |
35171528 |
T |
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| Q |
157 |
gctattcctttagcataaccaaa |
179 |
Q |
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|||| ||||| ||||||||||| |
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| T |
35171529 |
gctacaccttttgcataaccaaa |
35171551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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