View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16451_low_8 (Length: 409)
Name: NF16451_low_8
Description: NF16451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16451_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 40310137 - 40309758
Alignment:
| Q |
11 |
atcatcaccatattgtgtaagtaaataaagacaagcaagaaccaaaagtgtgataaaatgaacnnnnnnnnngataagcataatggtttaaatcacaaag |
110 |
Q |
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| T |
40310137 |
atcatcaccatattgtgtaagtaaataaagacaagcaagaacaaaaagtgtgataaaatgaaccaaaaaaaagttaagcataatggtttaaatcacaaag |
40310038 |
T |
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| Q |
111 |
ttgcattcctatattttattttgcagcgttgttatttaaacaattgattgtaaacaactttagcaataacctttttaagtaattgatgttgttcaaaatt |
210 |
Q |
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| T |
40310037 |
ttgcactcctatattttattttgcagcgttgttatttaaaca-ttgattgtaaacaactttagcaataacctttttaagtaattgatgttgttcaaaatt |
40309939 |
T |
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| Q |
211 |
caaatagatggatgatttggttcgatagaaatagttatggatataacatatgtcaaaacctattaatcataacttcatattgactacaaatttgagtgtg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
40309938 |
caaatagatggatgatttggttcgatagaaatagttatggatataacatatgtcaaaacctattaatcataacttc--attgactac-aatttgagtgtg |
40309842 |
T |
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| Q |
311 |
attaaccacagctttcaagtgttcaaacctacatgcagttaaatacttgaaaattatggtaaccatctccaaatttgaggttag |
394 |
Q |
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| T |
40309841 |
attaaccacaactttcaagtgttcaaacctacatgcagttaaatacttgaaaattatggtaaccatctccaaatttgaggttag |
40309758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 40329679 - 40329299
Alignment:
| Q |
11 |
atcatcaccatattgtgtaagtaaataaagacaagcaagaaccaaaagtgtgataaaatgaacnnnnnnnnn-gataagcataatggtttaaatcacaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
40329679 |
atcatcaccatattgtgtaagtaaataaagacaagcaagaacaaaaagtgtgataaaatgaaccaaaaaaaaagttaagcataatggtttaaatcacaaa |
40329580 |
T |
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| Q |
110 |
gttgcattcctatattttattttgcagcgttgttatttaaacaattgattgtaaacaactttagcaataacctttttaagtaattgatgttgttcaaaat |
209 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40329579 |
gttgcactcctatattttattttgcagcgttgttatttaaaca-ttgattgtaaacaactttagcaataacctttttaagtaattgatgttgttcaaaat |
40329481 |
T |
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| Q |
210 |
tcaaatagatggatgatttggttcgatagaaatagttatggatataacatatgtcaaaacctattaatcataacttcatattgactacaaatttgagtgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40329480 |
tcaaatagatggatgatttggttcgatagaaatagttatggatataacatatgtcaaaacctattaatcataacttc--attgactac-aatttgagtgt |
40329384 |
T |
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| Q |
310 |
gattaaccacagctttcaagtgttcaaacctacatgcagttaaatacttgaaaattatggtaaccatctccaaatttgaggttag |
394 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40329383 |
gattaaccacaactttcaagtgttcaaacctacatgcagttaaatacttgaaaattatggtaaccatctccaaatttgaggttag |
40329299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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