View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_high_12 (Length: 359)
Name: NF16452_high_12
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 18283311 - 18283530
Alignment:
| Q |
10 |
catcatcattttcttccaatgtgtatacatctctctatattgtttaatcaacgtaatttggattgtgaattcttcaacttgtattacaaattcaatcttc |
109 |
Q |
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| T |
18283311 |
catcatcattttcttccaatgtgtatacatctctctatattgtttaatcaacgtaatttggattgtgaattcttcaacttgtattacaaattcaatcttc |
18283410 |
T |
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| Q |
110 |
attgtatgattttgtttcttcaattatatcctttccattttcacatttttcattgctatagctttttacgtgaattatgcatgttatcataaatttacta |
209 |
Q |
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| T |
18283411 |
attgtatgagtttgtttcttcaattatatcctttccattttcacatttttcattgctatagctttttacgtgaattatgcatgttatcataaatttacta |
18283510 |
T |
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| Q |
210 |
caattaggatcaattctata |
229 |
Q |
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|||||| ||||||||||||| |
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| T |
18283511 |
caattaagatcaattctata |
18283530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 226 - 344
Target Start/End: Original strand, 18283550 - 18283668
Alignment:
| Q |
226 |
tatagattggaatttcttctacaataatatatgagaaatggaaattaaagtaatggttaagctagctcaaatagttggatgttttgtaatttaagaatta |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18283550 |
tatagattggaatttcttctacaataatatatgagaaatggaaattaaagtaatggttaagctagctcaaatagttggatgttttctaatttaagaatta |
18283649 |
T |
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| Q |
326 |
atattttggttatatatga |
344 |
Q |
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| T |
18283650 |
atattttggttatatatga |
18283668 |
T |
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