View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16452_high_13 (Length: 347)

Name: NF16452_high_13
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16452_high_13
NF16452_high_13
[»] chr3 (15 HSPs)
chr3 (19-328)||(28186480-28186787)
chr3 (19-328)||(28162429-28162738)
chr3 (19-328)||(28056975-28057290)
chr3 (19-328)||(28067400-28067715)
chr3 (19-230)||(28150518-28150728)
chr3 (181-311)||(26127459-26127590)
chr3 (181-311)||(26177509-26177640)
chr3 (180-328)||(26208509-26208659)
chr3 (180-328)||(26235250-26235400)
chr3 (191-301)||(26110387-26110497)
chr3 (180-311)||(26112795-26112927)
chr3 (191-328)||(26232699-26232840)
chr3 (191-299)||(26139283-26139391)
chr3 (228-291)||(11421245-11421308)
chr3 (191-311)||(26204657-26204779)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 28186480 - 28186787
Alignment:
Q  19 cttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatctgtag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28186480 cttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagaggcttaacactgaaattcttgttttctatttttaattttatctgtag 28186579  T
Q  119 tggaatcagactcttgcaaaatataatatatgatgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatctgtgta 218  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28186580 tggaatcagactcttgcaaaatataatatatggtgtaaaata--gtgaggttgatccattataagatatgatatatcatttagtgatttaaatctgtgta 28186677  T
Q  219 ggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtgaaaatgctttgaatctatttttatattct 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28186678 ggaagatcttgatgaccaaatggacatgacttctttttccattgctactacagagaccaatgatgaaggtgaaaatgctttgaatctatttttatattct 28186777  T
Q  319 tatgttactt 328  Q
    ||||||||||    
T  28186778 tatgttactt 28186787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 28162429 - 28162738
Alignment:
Q  19 cttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatctgtag 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  28162429 cttccgaatcttatatccaaagttatggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttattcgtag 28162528  T
Q  119 tggaatcagactcttgcaaaatataatatatgatgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatctgtgta 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28162529 tggaatcagactcttgcaaaatataatatatggtgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatctgtgta 28162628  T
Q  219 ggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtgaaaatgctttgaatctatttttatattct 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28162629 ggaagatcttgatgaccaaatggacatgacttctttttccattgctactacagagaccaatgatgaaggtgaaaatgctttgaatctatttttatattct 28162728  T
Q  319 tatgttactt 328  Q
    ||| ||||||    
T  28162729 tatcttactt 28162738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 28056975 - 28057290
Alignment:
Q  19 cttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatctgtag 118  Q
    |||| |||||||||||||||||||||   |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28056975 cttctgaatcttatatccaaagttaacaggaattgttgctcaatatttgtagatgcttgacactgaaattcttgttttctatttttaattttatctgtag 28057074  T
Q  119 tggaatcagactcttgcaaaatataatatatgatgtaaa-------atatagtgaggttgatccattataagatatgatatatcatttagtgatttaaat 211  Q
    |||||||||||||||||||| ||||||||||| ||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28057075 tggaatcagactcttgcaaactataatatatggtgttaattgttaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaat 28057174  T
Q  212 ctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtgaaaatgctttgaatctattttt 311  Q
    |||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  28057175 ctgtgtaggaagatcttgatgaccaaatggacatgagttattttt-cattgctactacagagaccaatgataaaggtgaaaatgctttgaatctattttt 28057273  T
Q  312 atattcttatgttactt 328  Q
    |||||||||||||||||    
T  28057274 atattcttatgttactt 28057290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 28067400 - 28067715
Alignment:
Q  19 cttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatctgtag 118  Q
    |||| |||||||||||||||||||||   |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28067400 cttctgaatcttatatccaaagttaacaggaattgttgctcaatatttgtagatgcttgacactgaaattcttgttttctatttttaattttatctgtag 28067499  T
Q  119 tggaatcagactcttgcaaaatataatatatgatgtaaa-------atatagtgaggttgatccattataagatatgatatatcatttagtgatttaaat 211  Q
    |||||||||||||||||||| ||||||||||| ||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28067500 tggaatcagactcttgcaaactataatatatggtgttaattgttaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaat 28067599  T
Q  212 ctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtgaaaatgctttgaatctattttt 311  Q
    |||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  28067600 ctgtgtaggaagatcttgatgaccaaatggacatgagttattttt-cattgctactacagagaccaatgataaaggtgaaaatgctttgaatctattttt 28067698  T
Q  312 atattcttatgttactt 328  Q
    |||||||||||||||||    
T  28067699 atattcttatgttactt 28067715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 28150518 - 28150728
Alignment:
Q  19 cttccgaatcttatatccaaagttaaggagaatcgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatctgtag 118  Q
    ||||||||||||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150518 cttccgaatcttacattcaaacttaagg-gaattgttgctcaatatttgtagatgcttaacactgaaattcttgttttctatttttaattttatctgtag 28150616  T
Q  119 tggaatcagactcttgcaaaatataatatatgatgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatctgtgta 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150617 tggaatcagactcttgcaaaatataatatatggtgtaaaatatagtgaggttgatccattataagatatgatatatcatttagtgatttaaatctgtgta 28150716  T
Q  219 ggaagatcttga 230  Q
    ||||||||||||    
T  28150717 ggaagatcttga 28150728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 26127590 - 26127459
Alignment:
Q  181 aagatatgata-tatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaat 279  Q
    ||||||||||| ||||||||  |||||| |||||||||||||||||  ||||  |||||| | ||||||||||||||||||| | ||| | |||||||||    
T  26127590 aagatatgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccatgacttctttttccatttccactgcagagaccaat 26127491  T
Q  280 gatgaaggtgaaaatgctttgaatctattttt 311  Q
    ||  |||||||||||||||||||| |||||||    
T  26127490 gaccaaggtgaaaatgctttgaatatattttt 26127459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 311
Target Start/End: Complemental strand, 26177640 - 26177509
Alignment:
Q  181 aagatatgata-tatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaat 279  Q
    ||||||||||| ||||||||  |||||| |||||||||||||||||  ||||  |||||| | ||||||||||||||||||| | ||| | |||||||||    
T  26177640 aagatatgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccatgacttctttttccatttccactgcagagaccaat 26177541  T
Q  280 gatgaaggtgaaaatgctttgaatctattttt 311  Q
    ||  |||||||||||||||||||| |||||||    
T  26177540 gaccaaggtgaaaatgctttgaatatattttt 26177509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 26208659 - 26208509
Alignment:
Q  180 taagatatgata-tatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaa 278  Q
    |||||||||||| ||||||||  |||||| |||||||||||||||||  ||||  | |||  | ||||| ||||||||||||| | ||||| ||||||||    
T  26208659 taagatatgataatatcatttgttgatttgaatctgtgtaggaagatgatgatagcaaaaaagccatgaattctttttccatttccactacagagaccaa 26208560  T
Q  279 tgatgaaggtgaaaatgctttgaatcta-tttttatattcttatgttactt 328  Q
    |||  |||||||||||||||||||| || ||||| ||||||||||||||||    
T  26208559 tgaccaaggtgaaaatgctttgaatatattttttctattcttatgttactt 26208509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 26235400 - 26235250
Alignment:
Q  180 taagatatgata-tatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaa 278  Q
    |||||||||||| ||||||||  |||||| |||||||||||||||||  ||||  | |||  | ||||| ||||||||||||| | ||||  ||||||||    
T  26235400 taagatatgataatatcatttgttgatttgaatctgtgtaggaagatgatgatagcaaaaaagccatgaattctttttccatttccactaaagagaccaa 26235301  T
Q  279 tgatgaaggtgaaaatgctttgaatcta-tttttatattcttatgttactt 328  Q
    |||  |||||||||||||||||||| || ||||| ||||||||||||||||    
T  26235300 tgaccaaggtgaaaatgctttgaatatattttttctattcttatgttactt 26235250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 26110497 - 26110387
Alignment:
Q  191 atatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtga 290  Q
    |||||||||  |||||| ||||| |||||||||||  ||||  |||||| || ||||||||||||||| || | ||||| |||||||||||  |||||||    
T  26110497 atatcatttgttgatttgaatctatgtaggaagatggtgatagccaaatagaaatgacttctttttccgtttccactacagagaccaatgaccaaggtga 26110398  T
Q  291 aaatgctttga 301  Q
    |||||||||||    
T  26110397 aaatgctttga 26110387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 26112927 - 26112795
Alignment:
Q  180 taagatatgata-tatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaa 278  Q
    |||||||||||| ||||||||  |||||| ||||||| ||||| |||  ||||  |||||| || ||||||||||||||||||   ||| | ||||||||    
T  26112927 taagatatgataatatcatttgctgatttgaatctgtataggatgatggtgatagccaaatagaaatgacttctttttccatttgcacttcagagaccaa 26112828  T
Q  279 tgatgaaggtgaaaatgctttgaatctattttt 311  Q
    |||  |||||||||||||| ||||| |||||||    
T  26112827 tgaccaaggtgaaaatgctctgaatatattttt 26112795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 328
Target Start/End: Complemental strand, 26232840 - 26232699
Alignment:
Q  191 atatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtga 290  Q
    |||||||||  |||||| |||||  ||||||||||  ||||  |||||| || |||||||| ||||||||| | ||||| |||||||||||  |||||||    
T  26232840 atatcatttgttgatttgaatctacgtaggaagatggtgatagccaaatagaaatgacttccttttccatttccactacagagaccaatgaccaaggtga 26232741  T
Q  291 aaatgctttga----atctatttttatattcttatgttactt 328  Q
    |||| ||||||    || | ||||| ||||||||||||||||    
T  26232740 aaatactttgattatatatttttttctattcttatgttactt 26232699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 26139391 - 26139283
Alignment:
Q  191 atatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtga 290  Q
    |||||||||  |||||| |||||||||||| |||   ||||  ||| || | ||||||||||||||||||| |  || |||||||||||||  |||||||    
T  26139391 atatcatttcttgatttgaatctgtgtaggtagacggtgatagccagatagccatgacttctttttccatttccgctgctgagaccaatgaccaaggtga 26139292  T
Q  291 aaatgcttt 299  Q
    |||||||||    
T  26139291 aaatgcttt 26139283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 11421245 - 11421308
Alignment:
Q  228 tgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggtgaa 291  Q
    |||||||||||| |  | |||||||||||||||||| | ||| |||||||||||| ||||||||    
T  11421245 tgatgaccaaatagctaagacttctttttccattgccaatacagagaccaatgatcaaggtgaa 11421308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 26204779 - 26204657
Alignment:
Q  191 atatcatttagtgatttaaatctgtgtaggaagatcttgatgaccaaattgacatgacttctttttccattgctactactgagaccaatgatgaaggt-- 288  Q
    |||||||||  |||||| ||| | |||||||||||  ||||  ||||||   | ||||||||||||||||| | ||||| |||||||||||  |||||      
T  26204779 atatcatttgttgatttgaatatatgtaggaagatggtgatagccaaataaccctgacttctttttccatttccactacagagaccaatgaccaaggtga 26204680  T
Q  289 gaaaatgctttgaatctattttt 311  Q
    |||||||||| |||| |||||||    
T  26204679 gaaaatgcttagaatatattttt 26204657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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