View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16452_high_15 (Length: 319)
Name: NF16452_high_15
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_high_15 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 119374 - 119079
Alignment:
| Q |
10 |
aagaaaatccatcaatacttttaactacacaacacctctggcagagattacaaatgctaaacaaattttctttactaaccatgatcatgttacaaacact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119374 |
aagaaaatccatcaatacttttaactacacaacacctctggcagagattacaaatgctaaacaaattttctttactaaccatgatcatgttacaaacact |
119275 |
T |
|
| Q |
110 |
gttgaatcatcctctatcaccacaactccattacaatccaaacttccacattaccataaagaaaactcaactgcttcaagagttaatagaacatcagttc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119274 |
gttgactcatcctctatcaccacaactccattacaatccaaacttccacattaccataaagaaaactcaactgcttcaagagttaatagaacatcagttc |
119175 |
T |
|
| Q |
210 |
gtttagataaaacagtttcaccatcttttccaatccctaatactcccactacatcc-nnnnnnnncaatggtgttactacacctttaggagatatt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
119174 |
ttttagataaaacagtttcaccatcttttccaatccctaatactcccactatatccaaaaaaaaacaatggtgttactacacctttaggagatatt |
119079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University