View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_high_16 (Length: 302)
Name: NF16452_high_16
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 38208954 - 38209223
Alignment:
| Q |
19 |
aaaaacttaaaggat-tttagatgcattagacctaaaaaatatcaatgatctaacttatcatcaaagtttataaatacttttctccccccaacagatatt |
117 |
Q |
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| T |
38208954 |
aaaaatttaaaggatctttaaatgcatttgatctaaaaaatatcaatgatctgacttatcatcaaagtttataaatacttttcttcccctaacagatatt |
38209053 |
T |
|
| Q |
118 |
actatcatctatgatta---ttattaattaaatatctgttcaaatttggtagtgatggaatcctatctcttgcaagattttggaaatggcactgttttga |
214 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38209054 |
actatcatctatgattattattattaattaaatatctgttcaaatttggcagtgatggaatcctatctcttgcaagattttggaaatggcactgttttga |
38209153 |
T |
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| Q |
215 |
tttttggagtccgcattaaagctaaatttccatctgaaagaggtgatttggtccagttgctatgcgtagt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38209154 |
tttttggagtccgcattaaagctaaatttccatctgaaagaggtgatttggtccagttgctatgcgtagt |
38209223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 39699897 - 39699856
Alignment:
| Q |
18 |
gaaaaacttaaaggattttagatgcattagacctaaaaaata |
59 |
Q |
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| T |
39699897 |
gaaaaacttaaatgattttagatgcatttgacctaataaata |
39699856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 31208943 - 31208983
Alignment:
| Q |
16 |
atgaaaaacttaaaggattttagatgcattagacctaaaaa |
56 |
Q |
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| T |
31208943 |
atgaaaaacttaaaggaccttagatgcatttgacctaaaaa |
31208983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 43968200 - 43968156
Alignment:
| Q |
16 |
atgaaaaacttaaaggattttagatgcattagacctaaaaaatat |
60 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
43968200 |
atgaaaaacttaaagacctttagatgcatttgacctaaaaaatat |
43968156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 14717805 - 14717845
Alignment:
| Q |
16 |
atgaaaaacttaaagga-ttttagatgcattagacctaaaa |
55 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
14717805 |
atgaaaaacttaaaggacttttagatgcatttgacctaaaa |
14717845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 11949368 - 11949328
Alignment:
| Q |
16 |
atgaaaaacttaaagga-ttttagatgcattagacctaaaa |
55 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
11949368 |
atgaaaaacttaaaggacttttagatgcatttgacctaaaa |
11949328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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