View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16452_high_18 (Length: 298)
Name: NF16452_high_18
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_high_18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 41975410 - 41975109
Alignment:
| Q |
1 |
actcagtcttatgtgacatgtctaagatgtaaccacatgtacgcggtccatttnnnnnnnt-----aaataaataaacaccaagtgtctgatacatgttg |
95 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
41975410 |
actcagtcttgtgtgacatgtctaagatgtaaccacatgtacgcggtccatttaaaaaaaataaaaaaataaataaacaccaagtttctgatacatgttg |
41975311 |
T |
|
| Q |
96 |
atgttcaaaatatgtctgacatgtcgatgcaacacttttaagaggtgtaattgcattgtagtttgaaaaacaaaaatattaagatccatacaattgagac |
195 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41975310 |
atgttcaaaatatatctgacatgtcgatacaacactttcaagaggtgtacttgcattgtagtttgaaaaacaaaaatattgagatccatacaattgagac |
41975211 |
T |
|
| Q |
196 |
aaatgtatacagttccaagnnnnnnnnnnatgtaagaatggttggactcatcgaggaaaattcacatcctcattcgtcaatttctctttagacacttcaa |
295 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
41975210 |
aaatgtatagagtcccaag-tttatatttatgtaagaatggttgggctcaccgaagaaaatttacatcctcattcgtcaatttctctttagacactttaa |
41975112 |
T |
|
| Q |
296 |
att |
298 |
Q |
| |
|
||| |
|
|
| T |
41975111 |
att |
41975109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University