View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_high_20 (Length: 283)
Name: NF16452_high_20
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 24377556 - 24377827
Alignment:
| Q |
1 |
cttctgttgcttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattcattttcattttcatatgcatcaatttg |
100 |
Q |
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| T |
24377556 |
cttctgttgcttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattca------ttttcatatgcatgcatttg |
24377649 |
T |
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| Q |
101 |
aatactaaggttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattg |
200 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24377650 |
aatactaagcttttatcctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttatcgggtctggtgttttgtcattg |
24377749 |
T |
|
| Q |
201 |
gcatggagtactgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagctacctatgcttct |
278 |
Q |
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| T |
24377750 |
gcatggagtactgctcaactaggatggattggagggccacttgcattactttcttgtgcaatagctacctatgtttct |
24377827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 24400410 - 24400664
Alignment:
| Q |
11 |
ttatgatgatgatggacatgccaaaaggactggtaaaattctaaattgcttcataaccaattcattttcattttcatatgcatcaatttgaatactaagg |
110 |
Q |
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| T |
24400410 |
ttatgatgatgacggacgtgccaaaaggacaggtaaaattctctatagcatcataaccaattgattttcat------atacttgaatttgaatactgaag |
24400503 |
T |
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| Q |
111 |
ttttattctgctacaaattctgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagta |
210 |
Q |
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| T |
24400504 |
ttttattcggg-ataaattctgcaggaaatgtaaaaagtgctgtggctcatatcatcacagctgttattggttctggtgttttgtctttggcatggagta |
24400602 |
T |
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| Q |
211 |
ctgctcaactaggatggattggagggccacttgcattgctttcttgtgcaatagctacctat |
272 |
Q |
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| T |
24400603 |
tttctcaattaggatggattggagggccacttgccttgttttcttgtgcaatagctacctat |
24400664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 24412972 - 24413105
Alignment:
| Q |
131 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
230 |
Q |
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| T |
24412972 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24413071 |
T |
|
| Q |
231 |
ggagggccacttgcattgctttcttgtgcaatag |
264 |
Q |
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| T |
24413072 |
ggaggaccagttaccttgctttgttgtgcaatag |
24413105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 131 - 264
Target Start/End: Complemental strand, 24421069 - 24420936
Alignment:
| Q |
131 |
tgcaggaaatttaaagagtgccttggctcatatcatcactggtgttattgggtctggtgttttgtcattggcatggagtactgctcaactaggatggatt |
230 |
Q |
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||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
24421069 |
tgcaggaaatttaaagagtgctgtggctcatatcatcacagcagttattggttctggtgttctgtcattggcatggagtactgctcaattaggatggatt |
24420970 |
T |
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| Q |
231 |
ggagggccacttgcattgctttcttgtgcaatag |
264 |
Q |
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||||| ||| || | ||||||| ||||||||||| |
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| T |
24420969 |
ggaggaccagttaccttgctttgttgtgcaatag |
24420936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24412841 - 24412885
Alignment:
| Q |
1 |
cttctgttgcttatgatgatgatggacatgccaaaaggactggta |
45 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
24412841 |
cttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24412885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24421200 - 24421156
Alignment:
| Q |
1 |
cttctgttgcttatgatgatgatggacatgccaaaaggactggta |
45 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
24421200 |
cttctggtgcttatgatgatgatggacatgcaaaaaggactggta |
24421156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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