View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16452_high_24 (Length: 249)

Name: NF16452_high_24
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16452_high_24
NF16452_high_24
[»] chr7 (4 HSPs)
chr7 (166-235)||(20118276-20118343)
chr7 (165-238)||(10623314-10623387)
chr7 (169-238)||(46611529-46611595)
chr7 (202-240)||(28302164-28302202)
[»] chr1 (13 HSPs)
chr1 (165-238)||(16256437-16256510)
chr1 (165-237)||(18650457-18650529)
chr1 (165-238)||(33323858-33323932)
chr1 (166-238)||(8327011-8327083)
chr1 (164-238)||(26762227-26762299)
chr1 (176-238)||(18628980-18629042)
chr1 (164-238)||(19757719-19757793)
chr1 (197-238)||(50959536-50959577)
chr1 (174-238)||(23777013-23777077)
chr1 (197-237)||(26759366-26759406)
chr1 (173-236)||(27901235-27901298)
chr1 (197-238)||(26925131-26925172)
chr1 (170-206)||(26925187-26925223)
[»] chr8 (5 HSPs)
chr8 (166-238)||(10659208-10659280)
chr8 (165-238)||(41940109-41940182)
chr8 (164-238)||(41566144-41566218)
chr8 (169-235)||(5950151-5950218)
chr8 (164-238)||(1029749-1029822)
[»] chr4 (12 HSPs)
chr4 (166-238)||(25100345-25100417)
chr4 (165-235)||(5383697-5383767)
chr4 (173-238)||(44207012-44207077)
chr4 (165-232)||(21121609-21121676)
chr4 (165-238)||(41839753-41839829)
chr4 (180-238)||(1745414-1745472)
chr4 (166-236)||(44136775-44136845)
chr4 (165-238)||(18402896-18402968)
chr4 (197-238)||(38011673-38011714)
chr4 (164-208)||(25100319-25100363)
chr4 (108-136)||(41839883-41839911)
chr4 (166-238)||(53813923-53813995)
[»] scaffold0003 (1 HSPs)
scaffold0003 (166-238)||(353249-353321)
[»] chr6 (2 HSPs)
chr6 (170-238)||(31303998-31304066)
chr6 (173-238)||(8209982-8210047)
[»] chr2 (5 HSPs)
chr2 (168-238)||(463775-463845)
chr2 (204-238)||(9848112-9848146)
chr2 (197-238)||(12419550-12419591)
chr2 (197-238)||(12431610-12431651)
chr2 (166-238)||(36254548-36254620)
[»] chr5 (1 HSPs)
chr5 (166-238)||(12566875-12566947)
[»] chr3 (1 HSPs)
chr3 (197-237)||(47005853-47005893)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 20118343 - 20118276
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgat 235  Q
    |||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||    
T  20118343 aacccgaaagggtctggttcgtttaacccgaaagggt--ggttgctgacgtattggactcatccctcgat 20118276  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 10623314 - 10623387
Alignment:
Q  165 aaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||| ||||||||||  |||| |||  ||||||||||| || ||||||||||||||||||||||||||    
T  10623314 aaacccgaaaaggtctggttctattaacccgatagggtttggttactaacgtattggactcatccctcgatctg 10623387  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 46611595 - 46611529
Alignment:
Q  169 ccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||||||||||| || ||| |||||| || |||   ||||||||||||||||||||||||||    
T  46611595 ccgaaagggtctggttcgttcaacccgaaagggtctgattg---acgtattggactcatccctcgatctg 46611529  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 28302202 - 28302164
Alignment:
Q  202 tttggttgctgacgtattggactcatccctcgatctgtg 240  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  28302202 tttggttactaacgtattggactcatccctcgatctgtg 28302164  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 16256437 - 16256510
Alignment:
Q  165 aaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||| ||||||||||||| ||||| ||| |||||| || ||||||||||||||||||||||||||||||||    
T  16256437 aaacccgtaagggtctggttcttttaacccgaaagggtctgtttgctgacgtattggactcatccctcgatctg 16256510  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 18650529 - 18650457
Alignment:
Q  165 aaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatct 237  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||| |||||||||||||||||||||| |||||    
T  18650529 aaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatct 18650457  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 33323858 - 33323932
Alignment:
Q  165 aaacccgaaagggtctggtt-cgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||| ||||||||| ||||| | ||| |||||| |||||  ||||||||||||||||||||||||||||    
T  33323858 aaacccgaaatggtctggtttcgtttgacccgaaagggtatggttaatgacgtattggactcatccctcgatctg 33323932  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 8327083 - 8327011
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||||||| ||||| | | |||| ||| |||||| ||||| ||||||||||| |||||||||||||||||    
T  8327083 aacccgaaaggatctgggttgattaacccgaaagggtctggtttctgacgtattgaactcatccctcgatctg 8327011  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 26762227 - 26762299
Alignment:
Q  164 taaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||| ||||||||||||||||||| ||| |||||| ||||| || |||||||| ||||  |||||||||||    
T  26762227 taaacccgtaagggtctggttcgtttaacccgaaagggtctggttactaacgtattgaactc--ccctcgatctg 26762299  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 18629042 - 18628980
Alignment:
Q  176 ggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||||||||||||   | |||||| ||||| ||||||||||||||||||||||| |||||    
T  18629042 ggtctggttcgtttaacttgaaagggtctggttactgacgtattggactcatccctcaatctg 18628980  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 19757719 - 19757793
Alignment:
Q  164 taaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||| ||||||||| ||||| |||||| ||| |||||| | ||| || |||||||||||||||||| |||||||    
T  19757719 taaactcgaaagggtttggtttgtttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctg 19757793  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 50959577 - 50959536
Alignment:
Q  197 aagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  50959577 aagggtctggttactgacgtattggactcatccctcgatctg 50959536  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 23777013 - 23777077
Alignment:
Q  174 agggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||| ||||| |||| ||| ||| |||||||  |||| ||||||||||||||||||||||||    
T  23777013 agggtctagttcgcttaacccgaaagtgtttggtcactgatgtattggactcatccctcgatctg 23777077  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 26759366 - 26759406
Alignment:
Q  197 aagggtttggttgctgacgtattggactcatccctcgatct 237  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  26759366 aagggtatggttactgacgtattggactcatccctcgatct 26759406  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 27901298 - 27901235
Alignment:
Q  173 aagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatc 236  Q
    ||||||||||||| ||||| ||| |||||| || ||||| |  |||||||||||||||||||||    
T  27901298 aagggtctggttcttttaacccgaaagggtctgtttgctaatatattggactcatccctcgatc 27901235  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 26925172 - 26925131
Alignment:
Q  197 aagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  26925172 aagggtatggttactgatgtattggactcatccctcgatctg 26925131  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 26925223 - 26925187
Alignment:
Q  170 cgaaagggtctggttcgtttaaaccgtaagggtttgg 206  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  26925223 cgaaagggtctggttcgtttaacccggaagggtttgg 26925187  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 10659280 - 10659208
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||||||| |||||||||||||| | | ||| || |||||||||||||||||||||||||||||||||||    
T  10659280 aacccgaaaggatctggttcgtttaacctgaaagagtctggttgctgacgtattggactcatccctcgatctg 10659208  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 41940182 - 41940109
Alignment:
Q  165 aaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||| |||||||||||||||||||| |||  ||||| |||||  |||||||||| |||||||||||||||||    
T  41940182 aaacccaaaagggtctggttcgtttaacccgatagggtatggtttttgacgtattgaactcatccctcgatctg 41940109  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 41566144 - 41566218
Alignment:
Q  164 taaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||||||||||| ||||||  |||| || ||||||| ||||| || ||||||| |||||||||| |||||||    
T  41566144 taaacccgaaagggtatggttctgttaacccataagggtctggttactaacgtattagactcatcccacgatctg 41566218  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 5950218 - 5950151
Alignment:
Q  169 ccgaaagggtctggttcgtttaaaccgtaa-gggtttggttgctgacgtattggactcatccctcgat 235  Q
    |||||||||||| ||||| |||| ||  || |||||||||| ||||||||||| ||||||||||||||    
T  5950218 ccgaaagggtcttgttcgattaaccccaaaagggtttggttactgacgtattgaactcatccctcgat 5950151  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 1029822 - 1029749
Alignment:
Q  164 taaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||| |||||||||||||  |||| ||| |||||| || || || |||||||||||||||||| |||||||    
T  1029822 taaacccggaagggtctggttctattaacccgaaagggtctg-ttactaacgtattggactcatcccacgatctg 1029749  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 25100345 - 25100417
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||| ||||||||||||||  |||| ||| |||||| ||||||||||||||||| |||||||||||||||||    
T  25100345 aacccaaaagggtctggttcaattaacccgaaagggtctggttgctgacgtattgaactcatccctcgatctg 25100417  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 5383697 - 5383767
Alignment:
Q  165 aaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgat 235  Q
    ||||||| | ||||||||||||||||| ||| |||||| |||| | |||||||||||||||||||||||||    
T  5383697 aaacccggaggggtctggttcgtttaatccgaaagggtctggtagttgacgtattggactcatccctcgat 5383767  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 44207077 - 44207012
Alignment:
Q  173 aagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||| |||||||| | |||||| |||||| ||||||||||||||||||| ||||||||    
T  44207077 aagggtctggtttgtttaaacagaaagggtctggttgttgacgtattggactcatccatcgatctg 44207012  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 21121609 - 21121676
Alignment:
Q  165 aaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctc 232  Q
    |||||||||||||||||||||||||||  || |||||| ||||| ||| ||||||| |||||||||||    
T  21121609 aaacccgaaagggtctggttcgtttaactcgaaagggtctggtttctggcgtattgaactcatccctc 21121676  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 41839829 - 41839753
Alignment:
Q  165 aaacccgaaagggtctggt---tcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||||||||||   |||||||| | | |||||| | ||| |||||||||||||||||||||||||||||    
T  41839829 aaacccgaaagggtctggtggttcgtttaacctgaaagggtcttgttactgacgtattggactcatccctcgatctg 41839753  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 1745414 - 1745472
Alignment:
Q  180 tggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||| ||| |||||| ||||| || |||||||||||||||||||| |||||    
T  1745414 tggttcgtttaacccgaaagggtctggttactaacgtattggactcatccctcaatctg 1745472  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 44136775 - 44136845
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatc 236  Q
    ||||||||||||||||||    | || ||| |||||| ||||| |||||||||||||||||||||||||||    
T  44136775 aacccgaaagggtctggtcatgtcaacccgaaagggtctggttactgacgtattggactcatccctcgatc 44136845  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 18402968 - 18402896
Alignment:
Q  165 aaacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||||||||||||||||| |  || ||| |||||| ||||| || |||||||| |||||||| ||||||||    
T  18402968 aaacccgaaagggtctggttc-tacaacccgaaagggtctggttactaacgtattgaactcatccatcgatctg 18402896  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 38011714 - 38011673
Alignment:
Q  197 aagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||| ||||| || ||||||||||||||||||||||||||    
T  38011714 aagggtctggttactaacgtattggactcatccctcgatctg 38011673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 25100319 - 25100363
Alignment:
Q  164 taaacccgaaagggtctggttcgtttaaaccgtaagggtttggtt 208  Q
    |||||||||||||||||||||||||||| ||  |||||| |||||    
T  25100319 taaacccgaaagggtctggttcgtttaacccaaaagggtctggtt 25100363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 41839911 - 41839883
Alignment:
Q  108 ctgatcatagactggtgggattggatttg 136  Q
    |||||||||||||||||||||||||||||    
T  41839911 ctgatcatagactggtgggattggatttg 41839883  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 53813995 - 53813923
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||||||||||||||||| | || ||  || | | ||||| |||| |||||| |||||||||||||||||    
T  53813995 aacccgaaagggtctggttcgataaacccaaaaagatctggtttctgatgtattgaactcatccctcgatctg 53813923  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 353321 - 353249
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||||||||| |  ||||  || |||||| ||||| ||||| |||||||||||||||||||||||    
T  353321 aacccgaaagggtctggtcctgttaactcgaaagggtctggttactgacatattggactcatccctcgatctg 353249  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 31303998 - 31304066
Alignment:
Q  170 cgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||| || ||||||| |||| ||| |||||| ||||| ||||||||||| |||||||||||||||||    
T  31303998 cgaaagagtttggttcgattaacccgaaagggtctggttactgacgtattgaactcatccctcgatctg 31304066  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 8209982 - 8210047
Alignment:
Q  173 aagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||||||||||| | ||| ||| |||| | ||||| || || |||||||||||||||||||||||    
T  8209982 aagggtctggttcttctaacccggaaggttctggttactaacttattggactcatccctcgatctg 8210047  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 463775 - 463845
Alignment:
Q  168 cccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||||||||||| ||| ||| |||| | || || ||||||||||| ||||||||| |||||||    
T  463775 cccgaaagggtctggttcgtataacccgaaaggatctgatttctgacgtattgaactcatcccccgatctg 463845  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 9848112 - 9848146
Alignment:
Q  204 tggttgctgacgtattggactcatccctcgatctg 238  Q
    ||||| |||||||||||||||||||||||||||||    
T  9848112 tggttactgacgtattggactcatccctcgatctg 9848146  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 12419591 - 12419550
Alignment:
Q  197 aagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||| || ||||||||||||||||||| ||||||    
T  12419591 aagggtttggttactaacgtattggactcatccctagatctg 12419550  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 12431651 - 12431610
Alignment:
Q  197 aagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||||| || ||||||||||||||||||| ||||||    
T  12431651 aagggtttggttactaacgtattggactcatccctagatctg 12431610  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 36254548 - 36254620
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||| |||||||||||||  | || ||| |||| | ||||| ||  |||||||||||||||||||||||||    
T  36254548 aacccggaagggtctggttctataaacccgaaaggttctggtttctatcgtattggactcatccctcgatctg 36254620  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 12566875 - 12566947
Alignment:
Q  166 aacccgaaagggtctggttcgtttaaaccgtaagggtttggttgctgacgtattggactcatccctcgatctg 238  Q
    |||||||||| |||||||| | |||| | | |||||  ||||| ||||||||||| |||||||||||||||||    
T  12566875 aacccgaaagagtctggtttgattaacctgaaagggcctggtttctgacgtattgaactcatccctcgatctg 12566947  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 47005893 - 47005853
Alignment:
Q  197 aagggtttggttgctgacgtattggactcatccctcgatct 237  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  47005893 aagggtctggttactgacgtattggactcatccctcgatct 47005853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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