View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_high_29 (Length: 226)
Name: NF16452_high_29
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_high_29 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26403270 - 26403494
Alignment:
| Q |
1 |
acatcatcaacaacaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtgatag |
100 |
Q |
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| T |
26403270 |
acatcatcaacaacaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaacagcatcaatggtggtagtgcaactacaagtgatag |
26403369 |
T |
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| Q |
101 |
tgttggtgaccaagcaatacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgtgagcaatataacagtatgttggtaagt |
200 |
Q |
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| T |
26403370 |
tgtt-gtgaccaagcaacacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgtgagcaacataacagtatgttggcaagt |
26403468 |
T |
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| Q |
201 |
aaaaaagcatagtgtatcacaatttt |
226 |
Q |
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| T |
26403469 |
taaaaagcatagagaatcacaatttt |
26403494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 26395415 - 26395520
Alignment:
| Q |
74 |
tggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgt |
173 |
Q |
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| T |
26395415 |
tggtggtagtgcatctgcaaatgttggtgttggtgatcaagcaacacaaaatttggatccaaagaggctcaaacggtatacttgtgtaacttatatttgt |
26395514 |
T |
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| Q |
174 |
gagcaa |
179 |
Q |
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| T |
26395515 |
gagcaa |
26395520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 26402493 - 26402577
Alignment:
| Q |
13 |
acaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtga |
97 |
Q |
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| T |
26402493 |
acaacaataacttaaatatagaaaaatcaaatcttggttatattgagaagaaccacatgaatggtggtagagcaactacaggtga |
26402577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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