View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_high_7 (Length: 460)
Name: NF16452_high_7
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_high_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Complemental strand, 36512624 - 36512169
Alignment:
| Q |
8 |
ccaagaaaatcgcccataaataaggggagaaatgggctgaatttggaacctgaacagagaatggaacagaaactgttgaaacaggaatcagggtcgggat |
107 |
Q |
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| T |
36512624 |
ccaacaaaatcgcccataaataaggggagaaatgggctgaatttggaacctgaacagagaatggaacagaaactgttgaaacaggaatcaggatcgggat |
36512525 |
T |
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| Q |
108 |
tggaacagaaatcagatggagatctcgtggaatcgaaaccggaacagaaagccgttgaagaagattttgtgaagtacttctctaagttctctaagtatga |
207 |
Q |
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| T |
36512524 |
tggaacagaaatcagatggagatctcgtggaatcgaaaccggaacagaaagccgttgaagaagattttgtgaagtacttctctaagttctctaagtatga |
36512425 |
T |
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| Q |
208 |
cgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaatctataaggagaag |
307 |
Q |
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| T |
36512424 |
cgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaatctataaggagaag |
36512325 |
T |
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| Q |
308 |
tctcgcaacctaagtgtacgcatctatctacctatttcaattttgtttttaatttcactctcattcattcattcttggacaacgcaggtgtacgatgcta |
407 |
Q |
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| T |
36512324 |
tctcgcaacctaagtgtacgcatctatctatctatttcaattttgtttttaatttcactctcattcattcattcttggacaacgcaggtgtacgatgcta |
36512225 |
T |
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| Q |
408 |
tcgcccgtccaccaagatcccatttaattttagtg---ggcggtgtcacaccccat |
460 |
Q |
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| T |
36512224 |
tcgcccgtccaccaagatcccatttaattttaatgggcggcggtgtcacaccccat |
36512169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 194 - 337
Target Start/End: Original strand, 36808369 - 36808510
Alignment:
| Q |
194 |
ttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaa |
293 |
Q |
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||||||||| ||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
36808369 |
ttctctaagcatgacgattccgactttccatattacggcaaacgtggtaattttgagtataagaatgaggcatataggaagc--aaggctcaaattcaaa |
36808466 |
T |
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| Q |
294 |
tctataaggagaagtctcgcaacctaagtgtacgcatctatcta |
337 |
Q |
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| T |
36808467 |
tatataaggagaagtctcacaacctaagtgtacgcatctatcta |
36808510 |
T |
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