View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16452_low_1 (Length: 969)
Name: NF16452_low_1
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 487 - 958
Target Start/End: Original strand, 34880059 - 34880530
Alignment:
| Q |
487 |
aaaaattagtcttcctgccattgcccacttttctcaacaccctatttgtgaactaatcatcccccacactcccatccaataggatcaaatccttccaaca |
586 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34880059 |
aaaaattagtcttccagccattgcccacttttctcaacaccctatttgtaaactaatcatcccccacactcccatccaataggatcaaatccttccaaca |
34880158 |
T |
|
| Q |
587 |
caacgatgtaaacctcaactattttgctcctaccaccagttccaaaccttcaatttgctcaccatacttctccatcaaaacttgctttgaaagagaattc |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34880159 |
caacgatgtaaacctcaactattttgctcctaccaccagttccaaaccttcaatttgctcaccatacttctccatcaaaacttgctttgaaagagaattc |
34880258 |
T |
|
| Q |
687 |
acctcttgatgtagatgtcatttccactttgtgagtagttgtagactcatattaaccaccctaacatctttcgccccaaacccctctaacttcttggttg |
786 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34880259 |
acctcttgaagtagatgtcatttccactttgtgagtagttgtagactcatattaaccaccctaacatctttcgccccaaacccctctaacttcttggttg |
34880358 |
T |
|
| Q |
787 |
gcaaaccttcctccatttgacccaacaatttttgtgacttccttttgtgaaaattgacttccgaacctagcatcatttcgaatcctctcaataatgcttt |
886 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||| |
|
|
| T |
34880359 |
gcaaaccttcctccatttgacccaacaatttttgtgacttccttttgtgaaaattgacttccgaccctgacaccatttggaatcctctcaataatgcttt |
34880458 |
T |
|
| Q |
887 |
caatgtccaaaattatccaccattggctcccatatacatagagtatcatcgacgtattgcaaatgccatatt |
958 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34880459 |
caatgtccaaaattatccaccattggctcccatatacatagagtatcatcgacgtattgcaaatgcgatatt |
34880530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 309 - 486
Target Start/End: Original strand, 34879801 - 34879978
Alignment:
| Q |
309 |
aaattcccttctcctccggagtccacaaccacacgtcatccacaccacccacattaactctttcgatgatagccactggattctcaattaaattaacttc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879801 |
aaattcccttctcctccggagtccacaaccacacgtcatccacaccacccacattaactccttcgatgatagccactggattctcaattaaattaacttc |
34879900 |
T |
|
| Q |
409 |
ccaatgacacggttgccgtctccaaataagattccatgataccactcaatcatgaattctccacaagtccccaacctt |
486 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34879901 |
ccaatgacacggttgccgtcttcaaataagattccatgataccactcaatcatgaattctccacaagtccccaacctt |
34879978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 814
Target Start/End: Complemental strand, 36988012 - 36987975
Alignment:
| Q |
777 |
ttcttggttggcaaaccttcctccatttgacccaacaa |
814 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
36988012 |
ttctaggttggcaaaccttcctccatttcacccaacaa |
36987975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University