View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16452_low_12 (Length: 360)

Name: NF16452_low_12
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16452_low_12
NF16452_low_12
[»] chr8 (1 HSPs)
chr8 (18-316)||(19729580-19729878)
[»] chr6 (2 HSPs)
chr6 (322-360)||(23585265-23585303)
chr6 (324-360)||(1815263-1815299)
[»] chr5 (3 HSPs)
chr5 (326-360)||(35306989-35307023)
chr5 (324-360)||(8986897-8986933)
chr5 (324-360)||(10169005-10169041)
[»] chr1 (4 HSPs)
chr1 (326-360)||(36230544-36230578)
chr1 (326-359)||(34867505-34867538)
chr1 (324-360)||(8770453-8770489)
chr1 (328-360)||(15161585-15161617)
[»] chr7 (1 HSPs)
chr7 (327-360)||(11900043-11900076)
[»] chr4 (2 HSPs)
chr4 (327-360)||(5344263-5344296)
chr4 (324-360)||(27246849-27246885)
[»] chr3 (3 HSPs)
chr3 (326-359)||(11963013-11963046)
chr3 (324-360)||(41722044-41722080)
chr3 (324-360)||(47530627-47530663)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 19729580 - 19729878
Alignment:
Q  18 attcatactttgttgatggcaccacagttctatcatattcatatctatgctgtttggtaccagcacaacattggacttaaagaacttatgactccttttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19729580 attcatactttgttgatggcaccacagttctatcatattcatatctatgctgtttggtaccagcacaacattggaattaaagaacttatgactccttttc 19729679  T
Q  118 ttgatctttaaagtaatgaatactccctcagtctcattataagtgcctcatttaagttgtatgcagttcttgtgaaaacaattttaatgatgttgaaaaa 217  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19729680 ctgatctttaaagtaatgaatactccctcagtctcattataagtgtctcatttaagttgtatgcagttcttgtgaaaacaattttaatgatgttgaaaaa 19729779  T
Q  218 gaataaaatggttttagacaatttagtaataacaaaagaaaagtaaagagttctttaaagtaaaacggacaatatttttcctacaccaagccttagttt 316  Q
    |||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||    
T  19729780 gaataaaatggtcttagacaacttagtaatcacaaaagaaaagtaaagagttctttaaagtaagacagacaatttttttcctacaccaagccttagttt 19729878  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 23585303 - 23585265
Alignment:
Q  322 tgaaaaattaaagggttaattgcacttttggacccctat 360  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  23585303 tgaaaaactaaaggcttaattgcacttttggacccctat 23585265  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 1815299 - 1815263
Alignment:
Q  324 aaaaattaaagggttaattgcacttttggacccctat 360  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  1815299 aaaaataaaaggcttaattgcacttttggacccctat 1815263  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 35307023 - 35306989
Alignment:
Q  326 aaattaaagggttaattgcacttttggacccctat 360  Q
    |||||||||| ||||||||||||||||||||||||    
T  35307023 aaattaaaggcttaattgcacttttggacccctat 35306989  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 8986933 - 8986897
Alignment:
Q  324 aaaaattaaagggttaattgcacttttggacccctat 360  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  8986933 aaaagttaaaggcttaattgcacttttggacccctat 8986897  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 10169005 - 10169041
Alignment:
Q  324 aaaaattaaagggttaattgcacttttggacccctat 360  Q
    |||||||||||| |||||||||||||||| |||||||    
T  10169005 aaaaattaaaggtttaattgcacttttggccccctat 10169041  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 36230544 - 36230578
Alignment:
Q  326 aaattaaagggttaattgcacttttggacccctat 360  Q
    |||||||||| ||||||||||||||||||||||||    
T  36230544 aaattaaaggtttaattgcacttttggacccctat 36230578  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 34867505 - 34867538
Alignment:
Q  326 aaattaaagggttaattgcacttttggaccccta 359  Q
    |||||||||| |||||||||||||||||||||||    
T  34867505 aaattaaaggcttaattgcacttttggaccccta 34867538  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 8770453 - 8770489
Alignment:
Q  324 aaaaattaaagggttaattgcacttttggacccctat 360  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  8770453 aaaaataaaaggcttaattgcacttttggacccctat 8770489  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 15161617 - 15161585
Alignment:
Q  328 attaaagggttaattgcacttttggacccctat 360  Q
    |||||||| ||||||||||||||||||||||||    
T  15161617 attaaaggcttaattgcacttttggacccctat 15161585  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 11900043 - 11900076
Alignment:
Q  327 aattaaagggttaattgcacttttggacccctat 360  Q
    ||||||||| ||||||||||||||||||||||||    
T  11900043 aattaaaggcttaattgcacttttggacccctat 11900076  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 5344263 - 5344296
Alignment:
Q  327 aattaaagggttaattgcacttttggacccctat 360  Q
    ||||||||| ||||||||||||||||||||||||    
T  5344263 aattaaaggcttaattgcacttttggacccctat 5344296  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 27246849 - 27246885
Alignment:
Q  324 aaaaattaaagggttaattgcacttttggacccctat 360  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  27246849 aaaaatcaaaggcttaattgcacttttggacccctat 27246885  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 11963046 - 11963013
Alignment:
Q  326 aaattaaagggttaattgcacttttggaccccta 359  Q
    |||||||||| |||||||||||||||||||||||    
T  11963046 aaattaaaggcttaattgcacttttggaccccta 11963013  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 41722044 - 41722080
Alignment:
Q  324 aaaaattaaagggttaattgcacttttggacccctat 360  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  41722044 aaaaataaaaggcttaattgcacttttggacccctat 41722080  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 47530663 - 47530627
Alignment:
Q  324 aaaaattaaagggttaattgcacttttggacccctat 360  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  47530663 aaaaaataaaggcttaattgcacttttggacccctat 47530627  T

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