View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_15 (Length: 333)
Name: NF16452_low_15
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 2007573 - 2007267
Alignment:
| Q |
17 |
gaatcttccttaccttctactccgatatacgttctctccattttgatctcacttagtaatgaacaatttctcgtgagtatgtaaaaggttgagtttgtta |
116 |
Q |
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| T |
2007573 |
gaatcttccttaccttctactccgatatacgttctctccattttgatctcacttagtaagggacaatttctcgtgagtatgaaaaaggttgagtttgtta |
2007474 |
T |
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| Q |
117 |
gctggcaacaaccgctaaggtttatagaggtcaagttatgaagaaatattgaaaacttgttgatacattgatcagttagaaagtcggcttttcgaaaatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2007473 |
gctggcaacaaccgctaaggtttatagaggtcaagttatgaagaaatattgaaaacttgttgatacattgatcagttagaaagtcagcttttcgaaaatc |
2007374 |
T |
|
| Q |
217 |
taagcattgaacatattgacatttggataaaacataaaagattcctgaaaatgtaaagttgtaacagtcttgcaggacaagttttttcagacactcaaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2007373 |
taagcattgaacatattgacatttggataaaacataaaagattcctgaaaatgtaaagttgcaacagtcttgcaggacaagttttttcagacactcaaca |
2007274 |
T |
|
| Q |
317 |
gcaccct |
323 |
Q |
| |
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||||||| |
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| T |
2007273 |
gcaccct |
2007267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 1742809 - 1743113
Alignment:
| Q |
17 |
gaatcttccttaccttctactccgatatacgttctctccattttgatctcacttagtaatgaacaatttctcgtgagtatgtaaaaggttgagtttgtta |
116 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| || | ||||||||| ||||||||| ||||||||||||| |||| |
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| T |
1742809 |
gaatcttcctcaccttctaccccgatatacgttctctccattttgatctcaagtagcaagggacaatttcttgtgagtatgaaaaaggttgagttcgtta |
1742908 |
T |
|
| Q |
117 |
gctggcaacaaccgctaaggtttatagaggtcaagttatgaagaaatattgaaaacttgttgatacattgatcagttagaaagtcggcttttcgaaaatc |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
1742909 |
gctggcaacaaccactaaggtttatagaggtcaagttaataagaaatatcgataacttgttgatacattgatcagttagaaagtcggctttacgaagatc |
1743008 |
T |
|
| Q |
217 |
taagcattgaacatattgacatttggataaaacataaaagattcctgaaaatgtaaagttgtaacagtcttgcaggacaagttttttcagacactcaaca |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| | | |||| |
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| T |
1743009 |
taaggattgaacatattgacatttggataaaacataaaatattcctgaaaatgtaaagttgcaacagtcttgaaggacaagttttttcagaaaattaaca |
1743108 |
T |
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| Q |
317 |
gcacc |
321 |
Q |
| |
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||||| |
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| T |
1743109 |
gcacc |
1743113 |
T |
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