View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16452_low_23 (Length: 256)
Name: NF16452_low_23
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_23 |
 | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold0273 (1 HSPs) |
| | |
|
| [»] scaffold0083 (2 HSPs) |
| | |
|
| [»] scaffold0401 (1 HSPs) |
| | |
|
| [»] scaffold0911 (1 HSPs) |
| | |
|
| [»] scaffold0637 (5 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0043 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 13354 - 13127
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13354 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
13255 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
13254 |
tcataactaaacaatcaaatacatataaaataatgaacatacataaaccagaaccaacaatgagtttggtgagatccaatgcgtgttcttcggcttcctg |
13155 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctcc |
232 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
13154 |
gtgccgtctatgctctgtttaggtctcc |
13127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44018144 - 44018379
Alignment:
| Q |
1 |
agattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44018144 |
agattaggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcag |
44018243 |
T |
|
| Q |
101 |
ctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || |
|
|
| T |
44018244 |
ctactcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttctttagctt |
44018343 |
T |
|
| Q |
201 |
cctggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |
|
|
| T |
44018344 |
cctggtgtcttctatgctctgtttttgtctccaaaa |
44018379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 3541524 - 3541749
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3541524 |
taggttttcattgatgttaaagagagttctt--caaattacatggtcaacagatcacaaagattcatctcatgacttaatcaatctaagagtttagctac |
3541621 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||| |||||||||| | |||||| |
|
|
| T |
3541622 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactataagtttgctgagatccaccgcgtgttcttcagcttcctg |
3541721 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctcc |
232 |
Q |
| |
|
||| |||||||||||| ||||||||||| |
|
|
| T |
3541722 |
gtgccgtctatgctctatttaggtctcc |
3541749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 6964049 - 6963819
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6964049 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
6963951 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||| | | ||||||| |||||| |||| ||||| |
|
|
| T |
6963950 |
tcataactaaacaatcgaatacatagaaa-taatagaacatacataaatcagaaccaactatgagttggctgagatccactgcgtgctcttcaacttcct |
6963852 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
6963851 |
ggtgttgtctatgctctgtttaggtctccaaaa |
6963819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 38431155 - 38430925
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38431155 |
taggtttacattgatgtcaaagagagttcttaacaaattacatgct-cacaaatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
38431057 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| ||| ||||||| ||||||||||| | ||||| |
|
|
| T |
38431056 |
tcataactaaacaatcaaatacatagaaa-taatagaacatacataaatcaaaaccaactatgagttgggtgagatccactgcgtgttcttcagcttcct |
38430958 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |
|
|
| T |
38430957 |
ggtgttgtctatgctatgtttaggtctccaaaa |
38430925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 12803620 - 12803850
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12803620 |
taggtttacattgatgtcaaagagagttcttaacaaattacatgct-cacaaatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
12803718 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||| ||||||| | || || |
|
|
| T |
12803719 |
tcataactaaacaatcaaatacatag-aaataatagaacatacataaatcagaaccaactatgagttgggtgagatccactgcatgttcttcagctttct |
12803817 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
12803818 |
ggtgctgtctatgctctgtttaggtctccaaaa |
12803850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 26152913 - 26152687
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152913 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgctt-acagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
26152815 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| ||||||||||||| || |||||||||||||| ||| ||||||| |||||||||| | ||||| |
|
|
| T |
26152814 |
tcataactaaacaattaaatacata-aaaataatagaacatacataaatcaataccaactatgagttgggtgagatccaccgcgtgttcttcagcttcct |
26152716 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctcc |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
26152715 |
ggtgtcgtctatgctttgtttaggtctcc |
26152687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 43548955 - 43548725
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43548955 |
taggttttcattgatgtcaaagagagttcttatcaaattacatgct-cacagatcacaaagattcatctcatggcttaatcaatataagagtttagctac |
43548857 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||| |||||| |||||| |||||||||||||||||| ||| ||||||| |||||||||| | ||||| |
|
|
| T |
43548856 |
tcataactaaacaatgaaatacacagaaa-taatagaacatgcataaatcagaaccaactatgagttgggtgagatccatcgcgtgttcttcagcttcct |
43548758 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |
|
|
| T |
43548757 |
ggtgccgtctatgctatgtttaggtctccaaaa |
43548725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 28578315 - 28578444
Alignment:
| Q |
67 |
ttcatctcatggcttaatcaatctaagagtttagctactcataactaa-acaatcaaatacatagaaaataatgaacatacataaaccagaaccaactat |
165 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| || ||||| || |||||||||||||||| |||||||||| || |
|
|
| T |
28578315 |
ttcatctcatggctcaatcaatctaaaagtttagctactcataactaagacaattaacaacataaaattaaatgaacatacataaatcagaaccaacaat |
28578414 |
T |
|
| Q |
166 |
gagtttg-gttagatccaatgcgtgttctt |
194 |
Q |
| |
|
||||| | || ||||||| ||| ||||||| |
|
|
| T |
28578415 |
gagttggtgtgagatccactgcatgttctt |
28578444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 17601444 - 17601351
Alignment:
| Q |
15 |
ttgatatcaaagaaagttcttaacaaattacatggttcacagatcacaa-agattcatctcatggcttaatcaatctaagagtttagctactcat |
108 |
Q |
| |
|
||||||||||| | ||||| ||||| |||||| ||||||| || |||| ||||||||||||||||| |||||||| || | |||||||||||| |
|
|
| T |
17601444 |
ttgatatcaaaaagagttca-aacaagttacattgttcacatattacaatagattcatctcatggctcaatcaatcaaacaaattagctactcat |
17601351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 748458 - 748554
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtt |
170 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||| |||| | | |||| | || | |||||||||||||| | | |||||||||||||| |
|
|
| T |
748458 |
tcatggctcaatcagactaagaatttagctactcataactaa-caattataagcataaacaagagtgaacatacataaatccggaccaactatgagtt |
748554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 20100346 - 20100305
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaa |
114 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
20100346 |
tcatggctcaatcaaactaagagtttagctactcatagctaa |
20100305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 33898088 - 33897857
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33898088 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctac |
33897989 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| |
|
|
| T |
33897988 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagcttggtgagatccaatgcgtgttctttagcttcctg |
33897889 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |
|
|
| T |
33897888 |
gtgtcttctatgctctgtttttgtctccaaaa |
33897857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 23441640 - 23441871
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
23441640 |
taggttttcattgaagtcaaaaagagttcttaacaaattacatggttcacagatcacaaagattcatatcatggcttaatcaatctaagagttcagctac |
23441739 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| |
|
|
| T |
23441740 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttctttagcttcctg |
23441839 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |
|
|
| T |
23441840 |
gtgtcttctatgctctgtttttgtctccaaaa |
23441871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 34553040 - 34553277
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
34553040 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcattgcttaatcaatctaagagtttaactac |
34553138 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaac-----caactatgagtttggttagatccaatgcgtgttctttggtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||| | | |
|
|
| T |
34553139 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactcaactatgagttgggtgagatccaccgcgtgttcttcagct |
34553238 |
T |
|
| Q |
200 |
tcctggtgtcgtctatgctctgtttaggtctccaaaaat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34553239 |
tcctggtgtcgtctatgctctgtttaggtctccaaaaat |
34553277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 50197272 - 50197502
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50197272 |
taggttttcattgatgtcaaagggagttcttaacaaattacatgct-cactgatcacaaagattcatctcatggcttaatcaatctaagagtttagttac |
50197370 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||| | ||| ||||||| ||||||||||| | ||||| |
|
|
| T |
50197371 |
tcataactaaacaattaaatacatag-aaataatagaacatacataaatcagaaccaactatgagctgggtgagatccaccgcgtgttctttagcttcct |
50197469 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50197470 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
50197502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 18392155 - 18391925
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
18392155 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcatggcttaatcaatttaagagtttagcttc |
18392057 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||||| ||| ||||||| |||||||||| | ||||| |
|
|
| T |
18392056 |
tcataactaaaacatcaaatacatag-aaataatataacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttcttcagcttcct |
18391958 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18391957 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
18391925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 6195508 - 6195372
Alignment:
| Q |
100 |
gctactcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||| | |
|
|
| T |
6195508 |
gctactcataactaaacaatcaaatacatagaaa-taatagaacatacataaatcagaaccaactatgagttgggtgagatccaccacgtgttcttcagc |
6195410 |
T |
|
| Q |
199 |
ttcctggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
6195409 |
ttcttggtgccgtctatgctctgtttaggtctccaaaa |
6195372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 3088089 - 3088189
Alignment:
| Q |
7 |
ggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctactc |
106 |
Q |
| |
|
|||||| |||||| ||||| | |||||||||||||||||||| | |||| || ||||| ||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
3088089 |
ggtttttattgatgtcaaatagagttcttaacaaattacatgct-cacacattacaaa-attcatctcatggcttaatcaatctaaaagcttaactactc |
3088186 |
T |
|
| Q |
107 |
ata |
109 |
Q |
| |
|
||| |
|
|
| T |
3088187 |
ata |
3088189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 6195580 - 6195506
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggct |
80 |
Q |
| |
|
||||||||||| ||| ||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
6195580 |
taggttttcatcgatgtcaaagagcgttcgtaacaaattacatgct-cacagatcacaaagattcatctcatggct |
6195506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 17903202 - 17903299
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtt |
170 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| || |||||| | | |||| | || | |||||||||||||| | | |||||||||||||| |
|
|
| T |
17903202 |
tcatggctcaatcaaactaagagtttagctactcatggcttaacaattataagcataaataagagtgaacatacataaatccggaccaactatgagtt |
17903299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 12746568 - 12746338
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12746568 |
taggttttcattgatgtcaaagagagttattaacaaattacatggttcacagatcacaaagatccatctcatggcttaatcaatttaagagtttagctac |
12746469 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||| |
|
|
| T |
12746468 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgaaatccaatgcgtgttcttcggcttcctg |
12746369 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaa |
235 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
12746368 |
gtgtcgtctatgctctatttaggtctccaaa |
12746338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 35027489 - 35027720
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35027489 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagcttagctac |
35027588 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||| | |||||| |
|
|
| T |
35027589 |
tcataactaaacaatcaaacacatagaaaatagcgaacatacataaaccagaaccaactatgagatgggtgagatccactgcgtgttcttcagcttcctg |
35027688 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
35027689 |
gtgccgtctatgctctgtttaggtctccaaaa |
35027720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 11296403 - 11296633
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
11296403 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatcacatggcttaatcaatttaagagtttagctac |
11296501 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||| ||||||| | |||||||| | ||||| |
|
|
| T |
11296502 |
tcataactaaacaaccaaatacatag-aaataatagaacatacataaatcagaaccaactatgagttgggtgagatccacagtgtgttcttcagcttcct |
11296600 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |
|
|
| T |
11296601 |
ggtgttgtctatgctctatttaggtctccaaaa |
11296633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15579234 - 15579468
Alignment:
| Q |
1 |
agattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttag |
100 |
Q |
| |
|
|||||||| |||||||||| | ||||| |||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
15579234 |
agattagggtttcattgatgttaaagagagttcttaacaaattaca-ccatcacagatcgcaaagatttatctcatagcttaattaatctaagagtttag |
15579332 |
T |
|
| Q |
101 |
ctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggttt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||| | |||||||||| ||||| |
|
|
| T |
15579333 |
ctactcataacaaaacaatcaaatacatagaaaatagtgaacatacataaatcagaaccaactatgagttgggtgagatctactgcgtgttctgcggttt |
15579432 |
T |
|
| Q |
201 |
cctggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
15579433 |
cctggtgccgtctatgctctatttaggtctccaaaa |
15579468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 28894837 - 28895067
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
28894837 |
taggtttttattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatcttatggcttaatcaatctaagagtttagatac |
28894935 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||| | ||||| |
|
|
| T |
28894936 |
acataactaaacaattaaatacatag-aaataatagaacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttcttcagcttcct |
28895034 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |
|
|
| T |
28895035 |
ggtgccgtctatgctatgtttaggtctccaaaa |
28895067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 33679544 - 33679774
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33679544 |
taggttttcattgatgtcaaagagagttcttaacaaattacatactt-acatattacaaagattcatctcatggcttaatcaatctaagagtttagctac |
33679642 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||| ||| ||||||| | ||||||||| ||||| |
|
|
| T |
33679643 |
tcataactaaacaatcaaatacatag-aaataatataacatacataaatcagaaccaactattagttgggtgagatccattacgtgttcttcaacttcct |
33679741 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| |
|
|
| T |
33679742 |
ggtgttgtctatgctctgtttaggtctctaaaa |
33679774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 7560591 - 7560688
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtt |
170 |
Q |
| |
|
|||||| | |||||| ||||||| ||||||||||||||||||||||||| | |||| | || | | |||||||||||| | |||||||||||||||| |
|
|
| T |
7560591 |
tcatggttcaatcaacctaagagattagctactcataactaaacaatcataaacatttacaagagtaaacatacataaatccgaaccaactatgagtt |
7560688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 2330995 - 2330898
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtt |
170 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | |||| |||| | |||| | || | | |||||||||||| | |||| ||||||||||| |
|
|
| T |
2330995 |
tcatggctcaatcaatctaagagtttagctactcatatcaaaacgatcataagcataaacaagagtaaacatacataaatccgaactaactatgagtt |
2330898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 2330332 - 2330185
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttg |
172 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| | |||| |||| | |||| | || | | |||||||||||| |||||||||||||||| | |
|
|
| T |
2330332 |
tcatggctcaatcaatctaagagtttagatactcatatcaaaacgatcataagcataaacaagagtaaacatacataaattcgaaccaactatgagttgg |
2330233 |
T |
|
| Q |
173 |
-gttagatccaatgcgtgttctttggtttcctggtgtcgtctatgctc |
219 |
Q |
| |
|
| |||| || || |||||||| || |||||||||| ||||||||| |
|
|
| T |
2330232 |
tatgagattcatggcttgttctttagtctcctggtgtcttctatgctc |
2330185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 31123130 - 31122985
Alignment:
| Q |
75 |
atggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttg-g |
173 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||| ||||||||||||||| | |||| | || | |||||||||||| | | |||||||||||||| | |
|
|
| T |
31123130 |
atggctcaatcaaactaagagtttaactactgataactaaacaatcataagcataaacaagagaaaacatacataaatccggaccaactatgagttggta |
31123031 |
T |
|
| Q |
174 |
ttagatccaatgcgtgttctttggtttcctggtgtcgtctatgctc |
219 |
Q |
| |
|
| |||| || || ||||||| ||| |||||||||| ||||||||| |
|
|
| T |
31123030 |
tgagattcagggcttgttcttcggtctcctggtgtcttctatgctc |
31122985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 17696291 - 17696243
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatca |
121 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
17696291 |
tcatggctcaatcaaactaagagcttagctactcatagctaaacaatca |
17696243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 17231560 - 17231463
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaa-ccagaaccaactatgagtt |
170 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| || ||||| | | ||||| | || | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
17231560 |
tcatggctcaatcaaactaagagtttagctactcatggcttcacaattataaacataaataagagtgaacatacataaatccag-accaactatgagtt |
17231463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 28327206 - 28326974
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28327206 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctac |
28327107 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttc-tttggtttcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||| |
|
|
| T |
28327106 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttttagcttcct |
28327007 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |
|
|
| T |
28327006 |
ggtgtcttctatgctctgtttttgtctccaaaa |
28326974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 28330531 - 28330299
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28330531 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctac |
28330432 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttc-tttggtttcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||| |
|
|
| T |
28330431 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttttagcttcct |
28330332 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |
|
|
| T |
28330331 |
ggtgtcttctatgctctgtttttgtctccaaaa |
28330299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 4250148 - 4249916
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4250148 |
taggttttcattgatgtcaaagagagtacttaacaaattacatggttcacagatcacaaagattcatctcatgacttaatcaatctaagagtttagctac |
4250049 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
4250048 |
tcataactacacaatcaaatgcatagaaaatagtgagcatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttcagcttcctg |
4249949 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaaa |
237 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
4249948 |
gtgtcgtctatgctatgtttaggtctccaaaaa |
4249916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 3305612 - 3305449
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3305612 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctac |
3305513 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgag |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3305512 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgag |
3305449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 27054633 - 27054514
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27054633 |
taggttttcattgatgtcaaagagagttcttaataaattacatgct-cacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
27054535 |
T |
|
| Q |
105 |
tcataactaaacaatcaaata |
125 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27054534 |
tcataactaaacaatcaaata |
27054514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 20536999 - 20537087
Alignment:
| Q |
82 |
aatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | ||||||| || | | |||||||||||| | | |||||||||||||| |
|
|
| T |
20536999 |
aatcaatctaagagtttagctactcataactaaacaattataaacatagacaagagtaaacatacataaatctggaccaactatgagtt |
20537087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 25491936 - 25491863
Alignment:
| Q |
36 |
aacaaattacatggttcacagatcacaa-agattcatctcatggcttaatcaatctaagagtttagctactcat |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
25491936 |
aacaaattacatggttcatagatcacaatagattcatctcatggctcgattaatctaagagcttagctactcat |
25491863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 19868715 - 19868642
Alignment:
| Q |
36 |
aacaaattacatggttcacagatcacaa-agattcatctcatggcttaatcaatctaagagtttagctactcat |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||| || || |||||| ||| |||||||||||| |
|
|
| T |
19868715 |
aacaaattacatggttcatagatcacaatagattcatctcatgactcgattaatctaggagcttagctactcat |
19868642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 11270823 - 11270736
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcac-aaagattcatctcatggcttaatcaatctaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||| | || |||| || ||||| |||| |||||||| ||||||||||| |
|
|
| T |
11270823 |
taggttttcattgatatcaaagaaagtacttaataaattacat-gcccatagattacaaaagactcatttcatggctcaatcaatctaa |
11270736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 18551305 - 18551206
Alignment:
| Q |
139 |
gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtgtcgtctatgctctgtttaggtctccaaaaat |
238 |
Q |
| |
|
||||||||||||| ||| || ||||||||| ||| | ||||| ||||||||||| | || |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
18551305 |
gaacatacataaatttgaaacagctatgagttgggtgatatccactgcgtgttcttcagctttctggtgtcgtctatgctctgtttaactctccgaaaat |
18551206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 40678128 - 40678360
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40678128 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagttcagctac |
40678227 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttc-tttggtttcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||| |
|
|
| T |
40678228 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttttagcttcct |
40678327 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |
|
|
| T |
40678328 |
ggtgtcttctatgctctgtttttgtctccaaaa |
40678360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 38316403 - 38316634
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaa-tctaagagtttagcta |
103 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
38316403 |
taggttttcattgatgtcaaagagagttcttaacaatttacatgct-cacatatcacaaagattcatctcatggcttaatcaaatctaatagtttagcta |
38316501 |
T |
|
| Q |
104 |
ctcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcc |
202 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||| ||| |||| || ||| ||||||| | |||| |
|
|
| T |
38316502 |
ctcataactaaacaatcaaatacatag-aaataatagaacatacataaatcagaaccaacaatgagttgggtgagatgcactgcatgttcttcagcttcc |
38316600 |
T |
|
| Q |
203 |
tggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |
|
|
| T |
38316601 |
tggtgttgtctatgctcagtttaggtctccaaaa |
38316634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 9748056 - 9748194
Alignment:
| Q |
98 |
tagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttgg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
9748056 |
tagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaatcaactaggagtttggtgagatccaacgcgtgttcttcaa |
9748155 |
T |
|
| Q |
198 |
tttcctggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9748156 |
cttcctggtgtcgtctatgctctgtttaggtctccaaaa |
9748194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 30994216 - 30994313
Alignment:
| Q |
139 |
gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||| | ||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
30994216 |
gaacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttctttagcttcctggtgccgtttatgctaagtttaggtctccaaaa |
30994313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 18011652 - 18011554
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttg |
172 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| || |||||| | | |||| | || | |||||||||||||| | | |||||||||||||||| |
|
|
| T |
18011652 |
tcatggctcaatcaaactaagagtttagctactcatagct-aacaattataagcataaataagagtgaacatacataaatccggaccaactatgagtttg |
18011554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0273 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0273
Description:
Target: scaffold0273; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 20041 - 20272
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20041 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
20140 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||| | |||||| |
|
|
| T |
20141 |
tcataactaaaaaatcaaatacatagaaaatatcgaacatacataaaccagaaccaactatgagttgggtgagatccactgcatgttcttcagcttcctg |
20240 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
20241 |
gtgtcgtctatgctctgtttaggtctccaaaa |
20272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 29084 - 28853
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29084 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
28985 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
28984 |
tcataactaaataatcaaatacatagaaaatagtgaacatacataaaccataaccaactatgagtttggtgagatccaatgcgtgttcttcgacttcctg |
28885 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |
|
|
| T |
28884 |
gtgtcgtctatgctctaattaggtccccaaaa |
28853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 52881 - 52653
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52881 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagatacatctcatgtcttaatcaatctaagagtttagctac |
52782 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| | |||||| |
|
|
| T |
52781 |
tcataactaaataatcaaataaatagaaaatagcgaacatacataaacctgaaccaactatgagtttggtgagatccaccgcgtgttcttcagcttcctg |
52682 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctcca |
233 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
52681 |
gtgccgtctatgctctgtttaggtctcca |
52653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 26337745 - 26337514
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26337745 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttgacaaatcacaaagactcgtctcatggcttaatcaatctaagagtttagctac |
26337646 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || || |||||| |
|
|
| T |
26337645 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccagaaccaactatgagtttggtgagatcgaatgcgtgttattcggcttcctg |
26337546 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
26337545 |
gtgtcgtctatgctctatttaggtctccaaaa |
26337514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 33920904 - 33920673
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
33920904 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatgacttaatcgatctaagagtttagctac |
33920805 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
33920804 |
taataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggtgagatccaccacgtgttcttcagcttcctg |
33920705 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
33920704 |
gtgacgtctatgctctgtttaggtctccaaaa |
33920673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 9690525 - 9690294
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9690525 |
taggttttcattgatgtcaaagagagttcgtaacaaattatatggttcacaaatcacaaagattcatctcatggctcaatcaatctaatagtttagctac |
9690426 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| || |||||||||||||| |||| || ||||| |
|
|
| T |
9690425 |
tcataactaaacaatcaaatacatagaaaatagtaaacatacataaaccagaaccaactatgagttttgtgagatccaatgcgtgctcttcggcttccta |
9690326 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| |
|
|
| T |
9690325 |
gtatcgtctatgctatgtttaggtctccaaaa |
9690294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2500360 - 2500594
Alignment:
| Q |
1 |
agattaggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2500360 |
agattaggttttcattgatgtcaaagagagttcttaacaaactacatgct-cacagatcacaaaaattcatctcatggcttaatcaatctaagagtttag |
2500458 |
T |
|
| Q |
101 |
ctactcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||| ||| ||||||| ||||||||||| | | |
|
|
| T |
2500459 |
ctactcataactaaacaatcaaatacatag-aaataatagaacatacataaatcacaaccaactatgagttgggtgagatccactgcgtgttcttcagct |
2500557 |
T |
|
| Q |
200 |
tcctggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2500558 |
tcctggtgtcgtctatgctctgtttaggtctccaaaa |
2500594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 33321282 - 33321510
Alignment:
| Q |
7 |
ggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctactc |
106 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33321282 |
ggttttcattgatgtcaaagagagttcttaacaaattacatgct-cacagatcacaaagattcatctcatgacttaatcaatctaagagtttagctactc |
33321380 |
T |
|
| Q |
107 |
ataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctgg |
205 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||| | ||||||| |
|
|
| T |
33321381 |
ataactaaacaattaaatacatag-aaataatagaacatacataaatcagaaccaactatgagttgggtgagatccaccgcgtgttcttcagcttcctgg |
33321479 |
T |
|
| Q |
206 |
tgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|| ||||||||| ||||||||||||||||| |
|
|
| T |
33321480 |
tgctgtctatgctatgtttaggtctccaaaa |
33321510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 35432836 - 35433060
Alignment:
| Q |
10 |
tttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctactcata |
109 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
35432836 |
tttcattgatatcaaagagagtttcagataaattacatggttcacagatcacaaagattcatcccatggcttaatcaatctaagagtttatttactcata |
35432935 |
T |
|
| Q |
110 |
actaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtgtc |
209 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||||| | | ||| |||| || || |||||| | |
|
|
| T |
35432936 |
actaaacaatcaaatacatagaaa-tagtgg-catacataaaccagaaccaactatgagtttggtgagatctactatgtgctcttaggctttctggtgcc |
35433033 |
T |
|
| Q |
210 |
gtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35433034 |
gtctatgctctgtttaggtctccaaaa |
35433060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 25185088 - 25184941
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttg |
172 |
Q |
| |
|
|||||||| |||||| ||||||||||| | ||||||||||||||||||| | |||| | || | | |||||||||||| | | |||||||||||||| | |
|
|
| T |
25185088 |
tcatggctcaatcaaactaagagtttaaccactcataactaaacaatcataagcataaacaagagtaaacatacataaatccggaccaactatgagttgg |
25184989 |
T |
|
| Q |
173 |
-gttagatccaatgcgtgttctttggtttcctggtgtcgtctatgctc |
219 |
Q |
| |
|
| |||| || || ||||||||||| |||||||||| ||||||||| |
|
|
| T |
25184988 |
tatgagattcagggcttgttctttggtctcctggtgtcttctatgctc |
25184941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 36330447 - 36330342
Alignment:
| Q |
66 |
attcatctcatggcttaatcaatctaagagtttagctactcataactaaa-caatcaaatacatagaaaataat-gaacatacataaaccagaaccaact |
163 |
Q |
| |
|
||||||||||| ||||| | ||||||| || | ||||||||||||| ||| |||| || ||||||||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
36330447 |
attcatctcattgcttagtgaatctaaaagctaagctactcataaccaaaacaattaataacatagaaa-taatagaacatacataaatcagaaccaact |
36330349 |
T |
|
| Q |
164 |
atgagtt |
170 |
Q |
| |
|
||||||| |
|
|
| T |
36330348 |
atgagtt |
36330342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 4732249 - 4732289
Alignment:
| Q |
74 |
catggcttaatcaatctaagagtttagctactcataactaa |
114 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
4732249 |
catggctcaatcaaactaagagtttagctactcatagctaa |
4732289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 56089670 - 56089901
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
56089670 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgattcacagatcacaaagattcatttcatggcttaatcaatctaagagtttagctac |
56089769 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||| |
|
|
| T |
56089770 |
tcataactaaacaatcaaatacatagaaaatagcgaacatacataaaccagaaccaactatgagtttggtgagatccaccgcgtgttcttcagcttcctg |
56089869 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| |
|
|
| T |
56089870 |
gtgccgtctatgctctgtttaggtctctaaaa |
56089901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 13978896 - 13978666
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13978896 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggtttaatcaatctaagagtttagctac |
13978797 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| | |||||||| | |||||| |
|
|
| T |
13978796 |
tcataactaaacaatc-aatacatagaaaatagcgaacatacataaaccagaaccaactatgagttgggtgagatccaccgtgtgttcttcagcttcctg |
13978698 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||| |||||||||||| ||||||||||||||| |
|
|
| T |
13978697 |
gtgccgtctatgctctatttaggtctccaaaa |
13978666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 26703847 - 26704077
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26703847 |
taggttttcattgatgttaaagagagttcttaacaaattaca-ccatcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
26703945 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||| ||||||||| |
|
|
| T |
26703946 |
tcataaccaaacaatcaaatacatagaaaatagtgaacatacataaattagaaccaactatgagttgggtgagatccactgcgtgttctgcggtttcctg |
26704045 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
26704046 |
gtgtcgtctatgctctgtttaggtctctaaaa |
26704077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 19928666 - 19928436
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19928666 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcattacttaatcaatctaagagtttagctac |
19928567 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| | |||||||| | |||||| |
|
|
| T |
19928566 |
tcataactaaacaatc-aatacatagaaaatagcgaacatacataaaccagaaccaactatgagttgtgtgagatccaccgtgtgttcttcagcttcctg |
19928468 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||| |||||||||||||||| ||||||||||| |
|
|
| T |
19928467 |
gtgccgtctatgctctgttttggtctccaaaa |
19928436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 15850935 - 15850705
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15850935 |
taggttttcattgatgtcaaagagagttcttaacaaattacatg-ttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
15850837 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||| ||||||| ||||||||||| | ||||| |
|
|
| T |
15850836 |
ttataactaaacaatcaaatacatagaaa-taatagaacatacatatatcagaaccaactatgagttgggtgagatccactgcgtgttcttcagcttcct |
15850738 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| ||||||||||| || |||||||||||| |
|
|
| T |
15850737 |
ggtgttgtctatgctctattgaggtctccaaaa |
15850705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 23652983 - 23652935
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaatca |
121 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
23652983 |
tcatggctcaatcaaactaagagtttagatactcataactaaacaatca |
23652935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 11560515 - 11560470
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaaacaa |
118 |
Q |
| |
|
||||| || |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
11560515 |
tcatgtctcaatcaaaccaagagtttagctactcataactaaacaa |
11560470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0401 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0401
Description:
Target: scaffold0401; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 4021 - 3790
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
4021 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggtttacatatcacaaagattcttctcatggcttaattaatctaagagtttagctac |
3922 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
3921 |
tcataactaaacaatcaaatacatagaaaatagtaaacatacataaaccagaaccaactatgagtttggtgagatccaatgcgtgttcttcggcttcctg |
3822 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
| |||||||| |||| ||||||||||||||| |
|
|
| T |
3821 |
gcgtcgtctacactctatttaggtctccaaaa |
3790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 5827789 - 5827558
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||| ||||| | ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5827789 |
taggttttctttgatgtaaaagagaattcttaacaaactacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagccac |
5827690 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
5827689 |
tcataactaaacaatcaaatacatagaaaatagtgaacatacataaaccaaaaccaactatgagtttggtgagatccaatgcgtgttcttcggcttccta |
5827590 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |
|
|
| T |
5827589 |
gtgtcgtctatgctctatttaggtcttcaaaa |
5827558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 13331851 - 13331621
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13331851 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgct-cgcagatcacaaagattcatctcatggcttaatcaatccaagagtttagctac |
13331753 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||||||| |||| |||||||| ||||||||| ||| ||||||| |||||||||| | ||||| |
|
|
| T |
13331752 |
gcataactaaacaatcaaatacatataaa-taatagaacatacgtaaatcagaaccagctatgagttgggtgagatccaccgcgtgttcttcagcttcct |
13331654 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
13331653 |
ggtgtcgtctatgctttgtttaggtctccaaaa |
13331621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 9466886 - 9466661
Alignment:
| Q |
9 |
ttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctactcat |
108 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9466886 |
ttttcattgatgtcaaagagagttcttaacaaattacatgct-caaagatcacaaagattcatctcatggcttaatcaatttaagagtttagctactcat |
9466788 |
T |
|
| Q |
109 |
aactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtgt |
208 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||||||| ||||| |||||||||||| ||| ||||||| || |||||||| | |||||| || |
|
|
| T |
9466787 |
aactaaacaatcaaatacatagaataatat-aacatacataaatcagaagcaactatgagttgggtgagatccactgtgtgttcttcagcttcctgttgc |
9466689 |
T |
|
| Q |
209 |
cgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9466688 |
cgtctatgctctgtttaggtctccaaaa |
9466661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 39660313 - 39660547
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| | || |||||| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
39660313 |
taggttttcattgatgtcaaagagagttcttaacaaattacatgct-catagatcataaagattcatctcgtgacttaatcaatctaagagtttagctac |
39660411 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatac----ataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||| |||||||||| ||| ||||||| ||| |||||| | | |
|
|
| T |
39660412 |
tcataactaaacaatcaaatacatagaaa-taatagaacatacatatataaatcagaacgtactatgagttgggtgagatccaccgcgcgttcttcagct |
39660510 |
T |
|
| Q |
200 |
tcctggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
39660511 |
tcctgatgccgtctttgctctgtttaggtctccaaaa |
39660547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 22653964 - 22653923
Alignment:
| Q |
73 |
tcatggcttaatcaatctaagagtttagctactcataactaa |
114 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
22653964 |
tcatggctcaatcaaactaagagtttagctactcatagctaa |
22653923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 4327 - 4094
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
4327 |
taggttttcattgatgtcaaagagagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatctatctaagagtttagcgtc |
4228 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataatgaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| | ||| || |
|
|
| T |
4227 |
tcataactaaacaatcaaatacatagaaattagcgaacatgcataaaccagaaccaactatgagtttggcgagatccactgcgtgttctttagcttcttg |
4128 |
T |
|
| Q |
205 |
gtgtcgtctatgctctgtttaggtctccaaaaat |
238 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| |
|
|
| T |
4127 |
gtgccgtctatgctttgtttaggtctccaaaaat |
4094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: scaffold0637
Description:
Target: scaffold0637; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 2021 - 1791
Alignment:
| Q |
5 |
taggttttcattgatatcaaagaaagttcttaacaaattacatggttcacagatcacaaagattcatctcatggcttaatcaatctaagagtttagctac |
104 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2021 |
taggttttcatttatgtcaaagagagttcttaacaaattacatgct-cacagatcataaagattcatctcatggcttcatcaatctaagagtttagctac |
1923 |
T |
|
| Q |
105 |
tcataactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcct |
203 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |||||||| |||| || |||||| |||||||| ||| | ||||| |||||||||||| | ||||| |
|
|
| T |
1922 |
tcataactaaacaatcaaatgcatagaaa-taatagaacatacttaaatcaaaaccaattatgagttgggtgaaatccattgcgtgttctttagcttcct |
1824 |
T |
|
| Q |
204 |
ggtgtcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| |
|
|
| T |
1823 |
ggtatcgtctctgctctgtttaggtctccaaaa |
1791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 1108 - 981
Alignment:
| Q |
109 |
aactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtg |
207 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||| || |||||||||| |||| ||| | ||||| ||||||||||| | ||||| ||| |
|
|
| T |
1108 |
aactaaacaatcaaatgcata-aaaataatagaacatacataaatcaaaaccaactataagttgggtgaaatccattgcgtgttcttcagcttcctagtg |
1010 |
T |
|
| Q |
208 |
tcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
1009 |
tcgtccatgctctgtttaggtctccaaaa |
981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 1648 - 1527
Alignment:
| Q |
109 |
aactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtg |
207 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||||| ||| || |||||||||| |||| ||| | ||||| ||||||||||| | ||||||||| |
|
|
| T |
1648 |
aactaaacaatcaaatgcatagaaa-taatagaacatacacaaatcaaaaccaactataagttgggtgaaatccattgcgtgttcttcagcttcctggtg |
1550 |
T |
|
| Q |
208 |
tcgtctatgctctgtttaggtct |
230 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
1549 |
tcgtctatgctcggtttaggtct |
1527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 838 - 711
Alignment:
| Q |
109 |
aactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtg |
207 |
Q |
| |
|
|||||||||||||||| ||| |||| |||| ||||||||||||| || |||||||| |||||| ||| | ||||| ||||||||||| | |||||||| |
|
|
| T |
838 |
aactaaacaatcaaatgcatggaaa-taatagaacatacataaatcaaaaccaactttgagttgggtgaaatccattgcgtgttcttcagcctcctggtg |
740 |
T |
|
| Q |
208 |
tcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
|||| |||||||| ||||||||||||||| |
|
|
| T |
739 |
tcgtttatgctctctttaggtctccaaaa |
711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 1378 - 1251
Alignment:
| Q |
109 |
aactaaacaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtttggttagatccaatgcgtgttctttggtttcctggtg |
207 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||||||||| || ||||||||| ||||| ||| | ||| | ||||| ||||| | ||||| ||| |
|
|
| T |
1378 |
aactaaacaatcaaatgcatagaaa-taatagaacatacataaatcaaaaccaactacgagttgggtgaaatctattgcgtattcttcagcttcctagtg |
1280 |
T |
|
| Q |
208 |
tcgtctatgctctgtttaggtctccaaaa |
236 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
|
|
| T |
1279 |
tcgtctatgctctatttaggtctccaaaa |
1251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 468871 - 468965
Alignment:
| Q |
77 |
ggcttaatcaatctaagagtttagctactcataactaa-acaatcaaatacatagaaaataat-gaacatacataaaccagaaccaactatgagtt |
170 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||||||| ||||| || |||||| |||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
468871 |
ggcttaatcaatctaaaagcttagctactcttaactaagacaattaacaacatag-gaataataaaacatacataaatcaggaccaactatgagtt |
468965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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