View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_25 (Length: 250)
Name: NF16452_low_25
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 44622769 - 44622600
Alignment:
| Q |
1 |
ttagcgtgcgtgagaagaaagnnnnnnngcgaatcaaatcaaatttatatcaaatttaaaaaccaagctaattttactgaaac-gttttatttgatttga |
99 |
Q |
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| T |
44622769 |
ttagcgtgcgtgagaagaaagaaaaaaagcgaatcaaatcaaatttatatcaaatttaaaaaccaagctaattttactgaaacagttttatttgatttga |
44622670 |
T |
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| Q |
100 |
aaatatagtttactcgcattatatattttcaaaccaaatctagaatccggatatttcgtgaatataacaa |
169 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44622669 |
aaatatagtttactcacattatatattttcaaaccaaatctacaatccggatatttcgtgaatataacaa |
44622600 |
T |
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