View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16452_low_27 (Length: 239)
Name: NF16452_low_27
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_27 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52770871 - 52771109
Alignment:
| Q |
1 |
agcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52770871 |
agcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaac |
52770970 |
T |
|
| Q |
101 |
acacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52770971 |
acacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaaaaa |
52771070 |
T |
|
| Q |
201 |
agctatatacagtatcaaacccaaaactgcaagccatcc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52771071 |
agctatatacagtatcaaacccaaaactgcaagccatcc |
52771109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 52766921 - 52767145
Alignment:
| Q |
15 |
agcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctgac |
114 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||| |||| |||||||||| ||||| |||||| | ||| |||| |||| ||||||||||||| |
|
|
| T |
52766921 |
agcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaatccaattcacagtagctgac |
52767020 |
T |
|
| Q |
115 |
ataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaaaaaagctatatacagta |
214 |
Q |
| |
|
|| || ||||| ||||||| || || | ||||||| || ||||| | |||||||||||| || |||||||| || |||||||| || ||||| || |
|
|
| T |
52767021 |
atccctccacacattcctcggtactcctgcggatatacttcagagtttactgcccacggcacaggccccatccctggcgagaaaaatgcaatatataggg |
52767120 |
T |
|
| Q |
215 |
tcaaacccaaaactgcaagccatcc |
239 |
Q |
| |
|
|||||| | ||| ||||||||||| |
|
|
| T |
52767121 |
ccaaaccaacaaccgcaagccatcc |
52767145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 392926 - 392778
Alignment:
| Q |
13 |
acagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctg |
112 |
Q |
| |
|
||||||| |||||||||||| | | || |||| | ||| ||||||| |||||||| ||| ||||| || | ||| |||| ||||||||| || |||| |
|
|
| T |
392926 |
acagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcgaaagaaagctctcggacacgatcaaatttgaaatccaacacacggtcgctg |
392827 |
T |
|
| Q |
113 |
acataccaccacaaattcctctatattctttaggatatatctctgagtt |
161 |
Q |
| |
|
||| || ||||| || |||| |||||||| |||||||||||||||||| |
|
|
| T |
392826 |
ccatgcccccacatatacctcgatattcttcaggatatatctctgagtt |
392778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University