View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_29 (Length: 236)
Name: NF16452_low_29
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36512130 - 36511909
Alignment:
| Q |
1 |
caagcttgcattggactattaccgtgnnnnnnncaataatcaggtaagagaatgaatattgtatgttgtttattcattaaattgaccaaactaattaatt |
100 |
Q |
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| T |
36512130 |
caagcttgcattggactattaccgtgaaaaaaacaataatcaggtaagagaatgaatattgtatgttgtttattcattaaattgaccaaactaattaatt |
36512031 |
T |
|
| Q |
101 |
gttcttcttcattatattagggtccaacttttgtgtttcatggccttgtcaagtgtacccatgcccttattaatggtagaatcttttacattacctttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36512030 |
gttcttcttcattatattagggtccaacttttgtgtttcatggccttgtcaagtgtacccatgcccttattaatggtagaatcttttacattacctttac |
36511931 |
T |
|
| Q |
201 |
cgcaaaagctgaagatgatctt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36511930 |
cgcaaaagctgaagatgatctt |
36511909 |
T |
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