View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_3 (Length: 690)
Name: NF16452_low_3
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 42202875 - 42203124
Alignment:
| Q |
17 |
agaagaagagaggaagaccgagaaagtatgcagcggatggttcggtgacggcagcgttgtctccgaaaccgatatcatcgtcggctccgttgccgccggt |
116 |
Q |
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| T |
42202875 |
agaagaagagaggaagaccgagaaagtatgcagcggatggttcggtgacggcagcgttgtctccgaaaccgatatcatcgtcggctccgttgccgccggt |
42202974 |
T |
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| Q |
117 |
gatcgatttcacggcggagaagcgtgcaaaagtgaagccagttagttctgtgagcaaagcgaattttgagttggaaaatataggtactgcttctaactag |
216 |
Q |
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| T |
42202975 |
gatcgatttcacggcggagaagcgtgcaaaagtgaagccagttagttctgtgagcaaagcgaattttgagttggaaaatataggtactgcttctaactag |
42203074 |
T |
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| Q |
217 |
aatatctctattttgttgtctactttttattttagttttgaaaaaattga |
266 |
Q |
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| T |
42203075 |
aatatctctattttgttgtctactttttattttatttttgaaaaaattga |
42203124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 427 - 674
Target Start/End: Original strand, 42203316 - 42203569
Alignment:
| Q |
427 |
ctcaaaagtggcttaatgtttggaactaaaatcttttcaattctaggtattatgttcgaattacgctgagtttgactaaatcacggtgtcaccgtagnnn |
526 |
Q |
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| T |
42203316 |
ctcaaaagtggcttaatgtttggaagtaaaatcttttcaattctaggtattatgttcgaatgacgctgagtttaactaaatcacggtgtcaccgtagttt |
42203415 |
T |
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| Q |
527 |
nnnnnnnnnncatt------gttaaaattacggtgacatattataattatgtgaaattcaccgtcaatccaaacatgcagtatgttaggctagaaatctg |
620 |
Q |
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| T |
42203416 |
tttttttttttttttttttggttaaaattacggtgacatattataattatgtgaaattcaccgtcaatccaaacatgcagtaagttaggctagaaatctg |
42203515 |
T |
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| Q |
621 |
caactgatgtttaacactttggattgagttgttgaattgaaagacttaaatatt |
674 |
Q |
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| T |
42203516 |
caactgatgtttaacactttggattgagttgttgaattgaaagacttaaatatt |
42203569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 42203200 - 42203292
Alignment:
| Q |
336 |
agaaatttggaatcagtgtttgacttatgtttatagcttatgtggaagtgaattcagattcagatgtgggacctctgaatatagttgtggtct |
428 |
Q |
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| T |
42203200 |
agaaatttggaatcagtgtttgacttatgtttatagtttgtgtggaagtgaattcagattcagatgtgggacctctgaatatagttgtggtct |
42203292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 13926582 - 13926508
Alignment:
| Q |
95 |
cgtcggctccgttgccgccggtgatcgatttcacggcggagaagcgtgcaaaagtgaagccagttagttctgtga |
169 |
Q |
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| T |
13926582 |
cgtctgctccgttgccgccggtgatcaatttcatggcggagaagcgtgcaaaagtgaagtcagttagctctgtga |
13926508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 12523826 - 12523892
Alignment:
| Q |
95 |
cgtcggctccgttgccgccggtgatcgatttcacggcggagaagcgtgcaaaagtgaagccagttag |
161 |
Q |
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| T |
12523826 |
cgtctgctccgttgccgccggtgatcaatttcatggcggagaagcgtgcaaaagtgaagccagttag |
12523892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 599
Target Start/End: Original strand, 4506757 - 4506790
Alignment:
| Q |
566 |
attatgtgaaattcaccgtcaatccaaacatgca |
599 |
Q |
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| T |
4506757 |
attatgtcaaattcaccgtcaatccaaacatgca |
4506790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 32060695 - 32060764
Alignment:
| Q |
100 |
gctccgttgccgccggtgatcgatttcacggcggagaagcgtgcaaaagtgaagccagttagttctgtga |
169 |
Q |
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| T |
32060695 |
gctccgttgccgccggtgatcaatttcatggcggagaagcgtgcaaaaatgaagccagttagctctgtga |
32060764 |
T |
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