View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16452_low_30 (Length: 233)

Name: NF16452_low_30
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16452_low_30
NF16452_low_30
[»] chr2 (3 HSPs)
chr2 (18-109)||(22039792-22039883)
chr2 (140-221)||(22004918-22005000)
chr2 (140-217)||(22039647-22039725)
[»] chr4 (1 HSPs)
chr4 (140-200)||(29930431-29930491)
[»] chr8 (1 HSPs)
chr8 (30-62)||(1313814-1313846)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 22039883 - 22039792
Alignment:
Q  18 attcaagggttcaatactacaaccaagcattatcccactaagtggagattcaagggctcaataataattatctaaaatccagcagggtttag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||||||||    
T  22039883 attcaagggttcaatactacaaccaagcattatcccactaagtggggactcaagggctcaataataattatctaaagtccatcagggtttag 22039792  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 22004918 - 22005000
Alignment:
Q  140 acatattcaagagttgaacttgtattacttgcgcataccattttgagttgcatctttt-cccgatctccggaaattccctcct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| |||||||||    
T  22004918 acatattcaagagttgaacttgtattacttgcgcataccattttgagttgcctcttttcccccatctccggaagttccctcct 22005000  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 22039725 - 22039647
Alignment:
Q  140 acatattcaagagttgaacttgtattacttgcgcataccattttgagttgcatctttt-cccgatctccggaaattccc 217  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||  ||||| ||| |||||||||| |||||    
T  22039725 acatattcaagagttgaacttgtattacttgcgcatgccatttagatttgccacttttcccccatctccggaagttccc 22039647  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 29930431 - 29930491
Alignment:
Q  140 acatattcaagagttgaacttgtattacttgcgcataccattttgagttgcatcttttccc 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  29930431 acatattcaagagttgaacttgtattacttgcgcatgccattttgagctgcttcttttccc 29930491  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 1313846 - 1313814
Alignment:
Q  30 aatactacaaccaagcattatcccactaagtgg 62  Q
    ||||| |||||||||||||||||||||||||||    
T  1313846 aatacaacaaccaagcattatcccactaagtgg 1313814  T

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