View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_4 (Length: 585)
Name: NF16452_low_4
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 328 - 574
Target Start/End: Original strand, 24377326 - 24377579
Alignment:
| Q |
328 |
gatcttcatcgttgctcgaaaaggatcctagc-----------tactatagcctataattttatattgcaactaagatcatttgcattgtgagcttcatc |
416 |
Q |
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| T |
24377326 |
gatcttcatcgttgctcgaaaaggatcctaacacctatataattactatagcctataattttatattgcaactaagatcatttgcattgtgagcttcatc |
24377425 |
T |
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| Q |
417 |
gttgctcgttaatttgtctttattattgtagctcaggattttctatcatatgcaccaaactcaagcttccattgagttatatatatatgcttggataaag |
516 |
Q |
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| T |
24377426 |
gttgctcgttaatttgtctttattattgtagctcaggattttctatcatatgcagcaaactcaaacttccattgagt----tatatatgcttggataaag |
24377521 |
T |
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| Q |
517 |
atgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatg |
574 |
Q |
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| T |
24377522 |
atgaataagcaaaattctctacaaataacgactgcttctgttgcttatgatgatgatg |
24377579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 24376985 - 24377176
Alignment:
| Q |
50 |
agagataagagatatttagtgaaaagaaacaaaaaagcacggaataatcggcggcaatggctaaacaacctttgaaagttgagtatataacatc---cca |
146 |
Q |
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| T |
24376985 |
agagataagagatatttagtgaaaataaacagaaaagcacggaataatcggcggcaatggctaaacaacctttgaaagtggagtatataacaacaaccca |
24377084 |
T |
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| Q |
147 |
actcagtcggatttagaatctccacactcggtgcgggatccttacccggttcagtac-----ttcaggtacccactccacccacctcttctca |
234 |
Q |
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| T |
24377085 |
actcagtcggatttagaatctccacactcggtgcgg-atccttacccggttcagtaaagtagttcaggtccccactccacccacctcttctca |
24377176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 24412796 - 24412864
Alignment:
| Q |
506 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatg |
574 |
Q |
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| T |
24412796 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatg |
24412864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 24421245 - 24421177
Alignment:
| Q |
506 |
cttggataaagatgaataagcaaaactctcttcaaataacaactgcttctgttgcttatgatgatgatg |
574 |
Q |
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| T |
24421245 |
cttggataaaaatggatgggaaaaactctcttcaaataacaaaagcttctggtgcttatgatgatgatg |
24421177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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