View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_5 (Length: 577)
Name: NF16452_low_5
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 37532070 - 37531511
Alignment:
| Q |
1 |
ttaaaagtcctgtctatattgttctgcaagttgattgtgttttctactttgattgtatttatgaatcaaatgagttagcatgcctttttatgattcctaa |
100 |
Q |
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| T |
37532070 |
ttaaaagtcctgtctatattgttctgcaagttgattgtgttt-ctattttgattgtatttatgaatcaaatgagttagcatg---ttttgtgattcctaa |
37531975 |
T |
|
| Q |
101 |
ttttgtggttacataaatgttgattcaagacaacatcttgcatgtaatgtattgaacttttttcttctattaaatttatgcaggaggatgctggtggggg |
200 |
Q |
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|||||| | |||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
37531974 |
ttttgtaggtacataaatgttgactcaacacaacatcttgcatgtaatgtattgaacttttgtcttctatgaaatttatgcaggaggatgctggtggggg |
37531875 |
T |
|
| Q |
201 |
tttagttttctggcacccaaagggtgctattgtgagacacataattgaagatttttggaaaaaagttcacatagaacgtggttatgatctattgtataca |
300 |
Q |
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| T |
37531874 |
tttagttttctggcacccaaagggtgctattgtgagacacataattgaagatttttggaaaaaagttcacatagaccgtggttatgatctattgtacaca |
37531775 |
T |
|
| Q |
301 |
ccacatgtggcaaaagctgatctttggaagatcagtggtcatttggacttctacaaggaaaatatgtatgatcagatgagcatcgaagatgagcattatc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
37531774 |
ccacatgtggcaaaagctgatctttggaagatcagtggtcatttggacttctacaaggaaaatatgtatgatcagatgagcattgaagatgagcgttatc |
37531675 |
T |
|
| Q |
401 |
aacttcgaccaatgaattgtccttatcatattttggtatacaaaaggaagcgtcattcctatcgggattttcctgttagggtagcagaattaggtactgt |
500 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37531674 |
aacttcggccaatgaattgtccttatcatattttggtatacaaaaggaagcgtcattcctatcgggattttcctgttagggtagcagaattaggtactgt |
37531575 |
T |
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| Q |
501 |
ttatagatatgaactgtctggaagtttacacggccttttccgcgttagaggtttcacacaggtt |
564 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37531574 |
ttatagatatgaactgtctggaagtttacacggccttttccgcgttagaggtttcacacaggtt |
37531511 |
T |
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