View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_7 (Length: 474)
Name: NF16452_low_7
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 14192629 - 14192173
Alignment:
| Q |
1 |
cacagatcttttccctggtttcaaatattgggtcttcggcatctattgctggctgattaagtttactgagaaactgtaacagaaaacaaccatccaatat |
100 |
Q |
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| T |
14192629 |
cacacatcttttccctggtttcaaatattgggtcttggggatctattgttgggtgttcaagtctactgagaagctgtaacagaaaacaaccatccaatat |
14192530 |
T |
|
| Q |
101 |
cattgttctcccgataacatctgcagttaattctgaacctaagatgctagcatcatagcttgcgcgggtgtctatttcaaatatgggaatatctacgtta |
200 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |
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| T |
14192529 |
catttttctcccgataacatctgtagttaattctgaacctaagatgctaccatcatagcttgcgcggatgtctatttcaaatatgggaatatcttcgcta |
14192430 |
T |
|
| Q |
201 |
catgcccttaacattgtcatgaatagttctggttcatgctgctggttttcttgacgcagaaacctgtccatgtattgccatttattgcctaccatcaatt |
300 |
Q |
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||||| |||||| |||| |||| | ||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
14192429 |
catgcacttaaccttgtgtcgaatgttcctggtacattctgctggttttcttgaagcagaaacctgttcatgtattgccatttaatgcctaccatcaatt |
14192330 |
T |
|
| Q |
301 |
ggacttggtggtagctcgtttctcccctgggtaagaaccctataaagatagactttggcgtgtaagcgtccttttttaggtctcgaagnnnnnnnggaac |
400 |
Q |
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|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
14192329 |
ggacttggcggtagttcgtttctcccctgggtaagagtcctataaagatagactttggcgtgtaagcgtcctcttttaggtctcgaagtttgtttggaac |
14192230 |
T |
|
| Q |
401 |
cctgcaaatgctgcatggatgaacttcttcgtaaagtctagactccaacgctgcttg |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14192229 |
cctgcaaatgctgcatggatgaacttcttcgtaaagtctagactccaacactgcttg |
14192173 |
T |
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