View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16452_low_9 (Length: 425)
Name: NF16452_low_9
Description: NF16452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16452_low_9 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 12078 - 12481
Alignment:
| Q |
7 |
aaaggcacacaagtgcagaatgagactcgagaacgactaagttgggtcttttaaaggtatgcaaaggcatcttgtataagtatgagcttatttgttt-gt |
105 |
Q |
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| T |
12078 |
aaaggcatgcaaatgcagaatgagactcaagaacgactaactcgagactataaaaggcatgcaaaggcaacttgtataagtatgagcttatatgtttagt |
12177 |
T |
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| Q |
106 |
aggaatgttggccagaatatgatgagttggctcaagctataccaatgaagagttgtttccttataccaatgaagatttgtaaccaaatggaaatgattat |
205 |
Q |
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| T |
12178 |
aagaatgttggccagaatatgatgagttggctcaagctataccaatgaagagttgtttccttataccaatgaagatttgtaaccaaatggaaatgattat |
12277 |
T |
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| Q |
206 |
ttgcagattctggtgggggtcagagaatggattaaaagaaattgcactggacaaagtggaccactttgtgtacatccaagaaggannnnnnncatggggt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12278 |
ttgcagattctggtgggggtcagagaatggattaaaagaaattgcactggacaaagtggaccactttgtgtacatccaagaagga-ggggggcatggggt |
12376 |
T |
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| Q |
306 |
tcaaaacttttagagacttcattgaagttatgtttgccaaatagtcttggaggttgatcaattatccaaattctcctattgctatgtgttttaaagaaaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12377 |
tcaaaacttttagagacttcattgaagttatgtttgccaaatagtcttggaggttgatcaattatccaaattctcctattgctatgtgttttaaagaaaa |
12476 |
T |
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| Q |
406 |
atatt |
410 |
Q |
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| T |
12477 |
atatt |
12481 |
T |
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