View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_high_11 (Length: 342)
Name: NF16453_high_11
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 105 - 323
Target Start/End: Original strand, 5586352 - 5586570
Alignment:
| Q |
105 |
aatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc |
204 |
Q |
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| T |
5586352 |
aatcatttagtgaaagtaaaagtgaaacacaaagttcaaggggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc |
5586451 |
T |
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| Q |
205 |
tataaatgtggcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattc |
304 |
Q |
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| T |
5586452 |
tataaatgtgtcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattc |
5586551 |
T |
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| Q |
305 |
ttgagctttgttaagactt |
323 |
Q |
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| T |
5586552 |
ttgagctttgttaagactt |
5586570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 315
Target Start/End: Original strand, 5592496 - 5592788
Alignment:
| Q |
5 |
taacacatattttcttgctccaatttcatgtaaagcctgttccatgtaccaaatgcctctattataaaccatgatattcataactaatgtaacttccatt |
104 |
Q |
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| T |
5592496 |
taacacatattttcttgctccaatttcatgtaaagcctgttacatataccaaatgcttctgttataaaccatgatattcataa----------------- |
5592578 |
T |
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| Q |
105 |
aatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc |
204 |
Q |
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| T |
5592579 |
-atcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagattttctgcatactgctcagggc |
5592677 |
T |
|
| Q |
205 |
tataaatgtggcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattc |
304 |
Q |
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| T |
5592678 |
tataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattc |
5592777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 148 - 315
Target Start/End: Original strand, 5572884 - 5573051
Alignment:
| Q |
148 |
atacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattggggaagaaagtaatt |
247 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
5572884 |
ataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattggggaagaaagtaatt |
5572983 |
T |
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| Q |
248 |
atttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattcttgagctttgt |
315 |
Q |
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| T |
5572984 |
gtttatgtaatcgttacttccaatattcacataatacaagcatttgttaaggtattgttgagctttgt |
5573051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 5586223 - 5586329
Alignment:
| Q |
1 |
cagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtaccaaatgcctctattataaaccatgatattcataactaatgtaacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586223 |
cagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtaccaaatgcctctattataaaccatgatattcataactaatgtaacttc |
5586322 |
T |
|
| Q |
101 |
cattaat |
107 |
Q |
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||||||| |
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| T |
5586323 |
cattaat |
5586329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 129 - 315
Target Start/End: Original strand, 5575896 - 5576082
Alignment:
| Q |
129 |
aaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatata |
228 |
Q |
| |
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||||||| |||| |||||||||| |||||| ||||||||||||| ||||||||||||||| || |||| |||||||||||| || |||||||| || | |
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| T |
5575896 |
aaacacagagtttgagtggataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgttgggtaga |
5575995 |
T |
|
| Q |
229 |
attggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattcttgagctttgt |
315 |
Q |
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| T |
5575996 |
attgaggacgaaagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgt |
5576082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
| Q |
5 |
taacacatattttcttgctccaatttcatgtaaagcctg |
43 |
Q |
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|||||||||||||||||||||||| ||||||| |||||| |
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| T |
5580576 |
taacacatattttcttgctccaatgtcatgtagagcctg |
5580614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 5575753 - 5575793
Alignment:
| Q |
5 |
taacacatattttcttgctccaatttcatgtaaagcctgtt |
45 |
Q |
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||||||||||||||| |||||||| |||||||||| ||||| |
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| T |
5575753 |
taacacatattttctagctccaatgtcatgtaaagtctgtt |
5575793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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