View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_high_13 (Length: 338)
Name: NF16453_high_13
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 444139 - 444450
Alignment:
| Q |
9 |
taactcgcttggtatctatcaatgacatatttatagggatcgggactatgatcctaaatttccaattttttaaacttaaaatgtgtgaatttagtgacta |
108 |
Q |
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| T |
444139 |
taactcgattggtatctatcaatgacatatttgtaaggatcgggattataatcctgaatttccaattttttaaacttaaaatgtgtgaatttagtgacta |
444238 |
T |
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| Q |
109 |
agctacttgactaagaaaaatgacagtgtactattctttattggaaagacatcagaactatgccgacacattttggtttaccatttgcatcactatagaa |
208 |
Q |
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| T |
444239 |
ag-tacttgactaagaaaaattacagtgtactattctttattggaaagacatcagaactatgccgacacattttggtttaccattttcatcactatagaa |
444337 |
T |
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| Q |
209 |
tttttattattaaataaaaacaatataaaaacagctcttggaggatgaggtaaaaactcagttaagaataaccagggtactcaacatcttcgttaaaaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
444338 |
tttttattattaaataaaaacaatataaaaacagctcttggaggatgaggtaaaaactcaagcaagaataaccagggtactcaacatcttcgttaaaaac |
444437 |
T |
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| Q |
309 |
cttctcaagaaaa |
321 |
Q |
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||||||||||||| |
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| T |
444438 |
cttctcaagaaaa |
444450 |
T |
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