View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_high_15 (Length: 287)
Name: NF16453_high_15
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 31346837 - 31347086
Alignment:
| Q |
17 |
catcatcagaatatctcccaaaagaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattg |
116 |
Q |
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| T |
31346837 |
catcatcagaatatctcccaaaagaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacagcgattg |
31346936 |
T |
|
| Q |
117 |
gtcttgagagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgcttt |
216 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31346937 |
gtcttgagagaagaaaaagtttgacgaatttccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccatttgtttt |
31347036 |
T |
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| Q |
217 |
gaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgtt |
266 |
Q |
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| T |
31347037 |
gaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgtt |
31347086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 64 - 266
Target Start/End: Original strand, 31357544 - 31357746
Alignment:
| Q |
64 |
tttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattggtcttgagagaagaaaaagtttgatgaatttccgaccattgtagttt |
163 |
Q |
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| T |
31357544 |
tttgaggttgttccaatattctcattctccaactgcatcctcaacagcaattgttcttgagagaagaaaaagtttgacgaattcccgaccattgaggttt |
31357643 |
T |
|
| Q |
164 |
ggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaat |
263 |
Q |
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| T |
31357644 |
ggttcaaatcagcagctattacttcagctaaaggataaacatccaattgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaat |
31357743 |
T |
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| Q |
264 |
gtt |
266 |
Q |
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||| |
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| T |
31357744 |
gtt |
31357746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 266
Target Start/End: Complemental strand, 2920430 - 2920289
Alignment:
| Q |
128 |
agaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagagga |
224 |
Q |
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| T |
2920430 |
agaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagcaactgttccttcagcgaaagggttataaacatccatttgttttgaagagga |
2920331 |
T |
|
| Q |
225 |
tgaaatgttcaagatactagtttcattgttatgaacaatgtt |
266 |
Q |
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| T |
2920330 |
tgaaatgttcaagatacaagtttcattgttatgaacaatgtt |
2920289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 266
Target Start/End: Complemental strand, 2925822 - 2925674
Alignment:
| Q |
118 |
tcttgagagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttg |
217 |
Q |
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||||| ||||||||||||||||| ||||| ||| |||||| ||| |||| ||| || || || || |||||||||| |||||||||||||| |||| |
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| T |
2925822 |
tcttgggagaagaaaaagtttgaagaattcccggccattgaggttaggttgggatcagccactgttgctccagctaaagggtaaacatccatttgttttg |
2925723 |
T |
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| Q |
218 |
aagaggatgaaatgttcaagatactagtttcattgttatgaacaatgtt |
266 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2925722 |
aagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgtt |
2925674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 29272460 - 29272326
Alignment:
| Q |
135 |
gtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggatgaaatg |
231 |
Q |
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|||||||||||| |||||||||| |||||||| |||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
29272460 |
gtttgatgaattcccgaccattgaggtttggttggaatcagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggatgaaatg |
29272361 |
T |
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| Q |
232 |
ttcaagatactagtttcattgttatgaacaatgtt |
266 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
29272360 |
ttcaagatactagtttcattgttgtgaacaatgtt |
29272326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 9447837 - 9447693
Alignment:
| Q |
129 |
gaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggat |
225 |
Q |
| |
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|||||||||||||||||| ||||| |||| |||||||| ||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
9447837 |
gaaaaagtttgatgaattcccgacaattgaggtttggttggaataagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggat |
9447738 |
T |
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| Q |
226 |
gaaatgttcaag----atactagtttcattgttatgaacaatgtt |
266 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9447737 |
gaaatgttcaagatatatactagtttcattgttatgaacaatgtt |
9447693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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