View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16453_high_25 (Length: 214)
Name: NF16453_high_25
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 253325 - 253508
Alignment:
| Q |
15 |
cagagatgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctcaggcgaaatcccgtcttctatagggaacttgaaacaat--g |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
253325 |
cagagatgctaatggacttcaaagaactttatgctctcaacttttcaaacaatggtctcaggcgaaatcccgtcttctatagggaacttgaaacaattag |
253424 |
T |
|
| Q |
113 |
agtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattag |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
253425 |
agtccttagacctctcaaataactctttagttagcaaaattcctgtgaaacttggaagcttgtcccttctttcttatttattag |
253508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 5856731 - 5856613
Alignment:
| Q |
26 |
atgaacttcaaagaactttatgctctcaacttttctaacaatgg--tctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttag |
121 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||||| |||||| | ||||||| |||||||| |||||||| || ||||||||||| | ||||| |||| |
|
|
| T |
5856731 |
atgaacttcaaagcacttcatgttctcaacttttcaaacaattgtctctcaggtgaaatcccatcttctattggaaacttgaaacagttggagtcattag |
5856632 |
T |
|
| Q |
122 |
acctctcaaataactcttt |
140 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5856631 |
acctctcaaataactcttt |
5856613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 5572752 - 5572868
Alignment:
| Q |
28 |
gaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagac |
123 |
Q |
| |
|
||||||||||| |||||| ||||||| |||| ||||| ||||| ||| ||||||| ||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
5572752 |
gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac |
5572851 |
T |
|
| Q |
124 |
ctctcaaataactcttt |
140 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
5572852 |
ctctcaaataacacttt |
5572868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 5584959 - 5585075
Alignment:
| Q |
28 |
gaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagac |
123 |
Q |
| |
|
||||||||||| |||||| ||||||| |||| ||||| ||||| ||| ||||||| ||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
5584959 |
gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac |
5585058 |
T |
|
| Q |
124 |
ctctcaaataactcttt |
140 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
5585059 |
ctctcaaataacacttt |
5585075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 5563385 - 5563243
Alignment:
| Q |
21 |
tgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctca--ggcgaaatcccgtcttctatagggaacttgaaacaat--gagtc |
116 |
Q |
| |
|
|||| ||| ||||||||| |||||||| |||||||||||| ||||||| |||| || ||||| || || |||| |||||| ||||||| | ||||| |
|
|
| T |
5563385 |
tgctgatggacttcaaagcactttatgttctcaacttttcaaacaatgctctctctggtgaaattccatcaactatcgggaacctgaaacagttggagtc |
5563286 |
T |
|
| Q |
117 |
cttagacctctcaaataactctttagttagcaaaattcctgtg |
159 |
Q |
| |
|
||| |||||||||||||||||| | ||| | || ||||||||| |
|
|
| T |
5563285 |
cttggacctctcaaataactctctggttggtaagattcctgtg |
5563243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 5604080 - 5603964
Alignment:
| Q |
24 |
taatgaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtcctt |
119 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||| |||||||||||| || |||||||| || || | |||||| ||||||| | ||||| || |
|
|
| T |
5604080 |
taatggacttcaaagcactttatgttctcaacttttcaaacaatggtctctatggtgaaatcccatcaactgttgggaacctgaaacagttggagtcttt |
5603981 |
T |
|
| Q |
120 |
agacctctcaaataact |
136 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5603980 |
ggacctctcaaataact |
5603964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 5557600 - 5557426
Alignment:
| Q |
21 |
tgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctca--ggcgaaatcccgtcttctatagggaacttgaaacaat--gagtc |
116 |
Q |
| |
|
|||||||| ||||||||| | | ||| |||||||||||| ||||||| |||| || |||||||| || |||| |||||| ||||||| | ||||| |
|
|
| T |
5557600 |
tgctaatggacttcaaagcaatccatgttctcaacttttcaaacaatgctctctctggtgaaatcccatcaactattgggaacctgaaacagttggagtc |
5557501 |
T |
|
| Q |
117 |
cttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttattt |
191 |
Q |
| |
|
||| ||||||||||||||||| || ||| | ||||||| ||| | |||| |||| |||| | ||||||||||| |
|
|
| T |
5557500 |
cttggacctctcaaataactcattggttggtgaaattccagtgcaacttgcaagcatgtcattcctttcttattt |
5557426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 5890965 - 5891044
Alignment:
| Q |
112 |
gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttattt |
191 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | ||||||||||| | |||| |||| |||| | ||||||||||| |
|
|
| T |
5890965 |
gagtccttggacctctcaaataactctttggttggtgaaattcctgtgcagcttgcaagcatgtcattcctttcttattt |
5891044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 5551807 - 5551715
Alignment:
| Q |
49 |
tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactc |
137 |
Q |
| |
|
|||||||||||| ||||||||| ||| || |||||||| || |||| |||||| ||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
5551807 |
tctcaacttttcgaacaatggtatctccggtgaaatcccatcaactattgggaacctgaaacagttagagtcattagacctctcaaataactc |
5551715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 1481797 - 1481702
Alignment:
| Q |
49 |
tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactcttt |
140 |
Q |
| |
|
|||||||||||| ||||||| | ||| || |||||||| || |||| |||||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
1481797 |
tctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttagagtccttagacctctcaaataactcttt |
1481702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University