View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_high_3 (Length: 711)
Name: NF16453_high_3
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 19 - 695
Target Start/End: Original strand, 19144407 - 19145085
Alignment:
| Q |
19 |
gatatagcaagagcaggaacctttgcatcagcattatgttgaaaatgaacaagaccctttgggaatataaacatatcaccaactgaaagattttgtgtga |
118 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19144407 |
gatatagcaagagcaggaaccttttgatcagcattatgttgaaaatgaacaagaccttttgggaatataaacatatcaccaactgaaagattttgtgtga |
19144506 |
T |
|
| Q |
119 |
agagtttactagttgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgct |
218 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19144507 |
agagtttgctagctgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgct |
19144606 |
T |
|
| Q |
219 |
gttaggttggaattgaagagcagcatatgacacactttgtccattcaatgatggaaattctgccatgcttgcttttattgccttgaaaggtggtggattt |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
19144607 |
gttaggttggaattgaagagcagcatatgacacactttgtccattcaatgatggaaattctgccatgcttgcttttattgctttgaaaggtggtgggttt |
19144706 |
T |
|
| Q |
319 |
gggcttggtggttgaacaaggactcgaaagcccgagaaggtgaagtagtttgcatcgactgggccggttatcgggcttatgaagtcggttagtatgtcgg |
418 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19144707 |
gggcttgggggttgaacaaggacgcgaaagcccgagaaggtgaagtagtttgcatcgactgggccggttatcgggcttatgaagtcggttagtatgtcag |
19144806 |
T |
|
| Q |
419 |
ggtcaccagccctagtgactgtcacaagggtaaacatggaaataatgagtgagacaacaactttcaaggtagaggaagacatgnnnnnnnagtatgatta |
518 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
19144807 |
ggtcaccagccctagtgattgtcacaagggtaaaagtggaaatgatgagtgagagaacaactttcaaggtagaggaagacatgtttttttagtatgatta |
19144906 |
T |
|
| Q |
519 |
taatgttgaagaactttgaagatgttgttggatgagatttgaagaattttatgtgtgaggatatatatagggaggggtttggttctatagttggaaattg |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19144907 |
taatgttgaagaactttgaagatgttgttggatgagatttgaagaatgttatgtgtgaggatatatatagggaggggtttggttctatagttgaaaattt |
19145006 |
T |
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| Q |
619 |
tgaggggg--aaaagggtttgttcttgtattctatgatctatctaatgcaggcttcatggatggacgacaccaccaatg |
695 |
Q |
| |
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| T |
19145007 |
tgagggggaaaaaagggtttgttcttgtattctatgatctatctaatgcaggcttcatggatggacgacaccaccaatg |
19145085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 695
Target Start/End: Complemental strand, 19148586 - 19147899
Alignment:
| Q |
19 |
gatatagcaagagcaggaacctttgcatcagcattatgttgaaaatgaacaagaccctttgggaatataaacatatcaccaactgaaagattttgtgtga |
118 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19148586 |
gatatagcaagagcaggaaccttttgatcagcattatgttgaaaatgaacaagaccttttgggaatataaacatatcaccaactgaaagattttgtgtga |
19148487 |
T |
|
| Q |
119 |
agagtttactagttgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgct |
218 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19148486 |
agagttttctagttgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgct |
19148387 |
T |
|
| Q |
219 |
gttaggttggaattgaagagcagcatatgacacactttgtccattcaatgatggaaattctgccatgcttgcttttattgccttgaaaggtggtggattt |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
19148386 |
gttaggttggaattgaagagcagcatatgacacactttgtccattcaatgatggaaattctgccatgcttgcttttattgctttgaaaggtggtgggttt |
19148287 |
T |
|
| Q |
319 |
gggcttggtggttgaacaaggactcgaaagcccgagaaggtgaagtagtttgcatcgactgggccggttatcgggcttatgaagtcggttagtatgtcgg |
418 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19148286 |
gggcttgggggttgaacaaggactcgaaagcccgagaaggtgaagtagtttgcatcgactgggccagttatcgggcttatgaagtcggttagtatgtcgg |
19148187 |
T |
|
| Q |
419 |
ggtcaccagccctagtgactgtcacaagggtaaacatggaaataatgagtgagacaacaactttcaaggtagaggaagacatg-nnnnnnnagtatg--- |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |
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| T |
19148186 |
ggtcaccagccctagtgactgtcacaagggtaaacgtggaaataatgagtgagagaacaactttcaagctagaggaagacatgttttttttagtatgatt |
19148087 |
T |
|
| Q |
515 |
------------attataatgttgaagaactttgaagatgttgttggatgagatttgaagaattttatgtgtgaggatatatatagggaggggtttggtt |
602 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||| |
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|
| T |
19148086 |
ataataattataattataatattgaagaactttgaagatg-tgttggatgagatttgaagagtgttatgggtgaggatatatataggga-gggtttggtt |
19147989 |
T |
|
| Q |
603 |
ctatagttggaaattgtgagggggaaaagg-gtttgttcttgtattctatgatctatctaatgcaggcttcatggatggacgacaccaccaatg |
695 |
Q |
| |
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| || ||| ||||||||| ||| |||||| ||||||||||||||||||| |||| | |||| | || |||||||||||||||||||||| |
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| T |
19147988 |
caatggttataaattgtgaagggaaaaaggattttgttcttgtattctatg----atcttaggcagacctcgtggatggacgacaccaccaatg |
19147899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 262
Target Start/End: Complemental strand, 36421369 - 36421164
Alignment:
| Q |
57 |
ttgaaaatgaacaagaccctttgggaatataaacatatcaccaactgaaagattttgtgtgaagagtttactagttgtgtcaacaaacccaacttgaagt |
156 |
Q |
| |
|
||||||||||||||| |||||||| || | |||||| |||||| | || | || ||||| || ||| | |||||||||||||| ||||| | ||| |
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| T |
36421369 |
ttgaaaatgaacaagtccctttggaaacacaaacatgtcaccaggttgtagtgtctgagtgaatagcttattggttgtgtcaacaaaaccaacattaagg |
36421270 |
T |
|
| Q |
157 |
gaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttggaattgaagagcagcatatgacacacttt |
256 |
Q |
| |
|
||||||| ||| | |||||||| || |||||||| |||||||| ||||||||||| ||| | |||| || | |||||||||||||| ||||||| |
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|
| T |
36421269 |
gaacctttaacgaggaagagtagctcggctgaacgagggtgtgtatgtggtggattgatggttccaggtgggtacattagagcagcatatgatacacttt |
36421170 |
T |
|
| Q |
257 |
gtccat |
262 |
Q |
| |
|
|||||| |
|
|
| T |
36421169 |
gtccat |
36421164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 36424820 - 36424688
Alignment:
| Q |
130 |
gttgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttgga |
229 |
Q |
| |
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||||||||||| || ||||| | ||| ||||||| ||| | |||||||| || |||||||| |||||||||||||||||||| ||| | |||| || |
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| T |
36424820 |
gttgtgtcaacgaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtgtgtggtggattgatggttccaggtgggt |
36424721 |
T |
|
| Q |
230 |
attgaagagcagcatatgacacactttgtccat |
262 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
36424720 |
acattagagcagcatatgatacactttgtccat |
36424688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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