View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16453_high_4 (Length: 710)
Name: NF16453_high_4
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 14 - 695
Target Start/End: Complemental strand, 44047614 - 44046933
Alignment:
| Q |
14 |
agaaaataatgatgcctcatttacagtataagtttgagaagaacttgaaatagaaaaacgggaatcgcatgctatcatctcttaataccaatccacgaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047614 |
agaaaataatgatgcctcatttacagtataagtttgagaagaacttgaaataaaaaaacgggaatcgcatgctatcatctcttaataccaatccacgaat |
44047515 |
T |
|
| Q |
114 |
taagtaatatttactatcccaaaacacagactcggagactgtaaatttatgtaacgtaagattgtttactagcatttctttggaaactctgaaagaacat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047514 |
taagtaatatttactatcccaaaacacagactcggagactgtaaatttatgtaacgtaagattgtttactagcatttctttggaaactctgaaagaacat |
44047415 |
T |
|
| Q |
214 |
tggttattttgcggcaactatgtatttcaattgatgaaaaaactccaaatatcatctacttaagcataaaataataactttagcaatgcttcaatataaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44047414 |
tggttattttgcggcaactatgtatttcaattgatgaaaaaactccaaatatcatctacttaagcataaaataataattttagcaatgcttcaatataaa |
44047315 |
T |
|
| Q |
314 |
agatcaccaaaaataacctatttatgaaacaactacaaatttacttgttaatattgttcaatgttttctccataagctctgccactaattaattttgtag |
413 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44047314 |
agatcaccaaaaataacccatttatgaaacaactacaaatttacttgttaatattgttcaatgttttctccataagctctgctactaattaattttgtag |
44047215 |
T |
|
| Q |
414 |
gttcaatgaataatatagctgcttgaaatttgaaggaaaccatgaataaataggtccctccaatcgtgaattggcagcgcataatatttaggcaccatgc |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047214 |
gttcaatgaataatatagctgcttgaaatttgaaggaaaccatgaataaataggtccctccaatcgtgaattggcagcgcataatatttaggcaccatgc |
44047115 |
T |
|
| Q |
514 |
aaaaggtagcttgtttaaatatcaatcaacaagcacccgtgtctgacttgggtgccaatatacattgcatttctcaattaggtgaatttcatttttaaca |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047114 |
aaaaggtagcttgtttaaatatcaatcaacaagcacccgtgtctgacttgggtgccaatatacattgcatttctcaattaggtgaatttcatttttaaca |
44047015 |
T |
|
| Q |
614 |
acatacatcatcatcattttatatcaatcacatacctgagattggtagttccagatacagacagttccagagtataaacttg |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44047014 |
acatacatcatcatcattttatatcaatcacatacctgagattggtagttccagatacagacagttccagagtataaacttg |
44046933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 647 - 695
Target Start/End: Original strand, 3144336 - 3144384
Alignment:
| Q |
647 |
acctgagattggtagttccagatacagacagttccagagtataaacttg |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
3144336 |
acctgagattggtagttccagatacagacagtcccggagtataaacttg |
3144384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 562
Target Start/End: Complemental strand, 4468420 - 4468282
Alignment:
| Q |
425 |
aatatagctgcttgaaatttgaaggaaaccatgaataaataggtccctccaatcgtgaattggcagcgcataa-tatttaggcaccatgcaaaaggtagc |
523 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| || | |||| ||||||||||||||| ||| || ||| ||||||| ||||||||||||| |
|
|
| T |
4468420 |
aatatagctgattgaaatttgaagggaaccataaaagataaggttcctccaatcgtgaatcaatagccaatttgtatataggcacactgcaaaaggtagc |
4468321 |
T |
|
| Q |
524 |
ttgtttaaatatcaatcaacaagcacccgtgtctgactt |
562 |
Q |
| |
|
|| ||| | || |||||||||||||||||||||||||| |
|
|
| T |
4468320 |
ttattttgaaattaatcaacaagcacccgtgtctgactt |
4468282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University