View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_high_6 (Length: 524)
Name: NF16453_high_6
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Complemental strand, 44048098 - 44047591
Alignment:
| Q |
16 |
gaatatctgggtacaaatccagcctttttcccaatcccaaagctttatgagcatatcatcagatgacgacagaacataaggaagggtgggatgaactgcc |
115 |
Q |
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| T |
44048098 |
gaatatctgggtacaaatccagcctttttcccaatcccaaagctttatgagcatatcatcagatgacgacagaacataaggaagggtgggatgaactgcc |
44047999 |
T |
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| Q |
116 |
acacatctaatgtaatctgtatgtgcttcaaatactttgactttatccattgtgttgtaattatatacacgaataaacatatcatctgctccagcaacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44047998 |
acacatctaatgtaatctgtatgtgcttcaaatactttgactttatccattgtgttgtaattatatacacgaataaacatatcatctgctccagcaacaa |
44047899 |
T |
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| Q |
216 |
cccactgtttgcgtgcaacaaacttcgctgatctaactgcaaaatcatgttgtgaaagagccccggtggtcttcagagtaagaatatatatgtaaaaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44047898 |
cccactgtttgcgtgcaacaaacttcgctgatctaactgcaaaatcatgttgtgaaagagccccggtggtcttcagagtaagaatatataagtaaaaata |
44047799 |
T |
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| Q |
316 |
tgccttcaagcaaatacatcaagagatttcaagcacaatgcagcaagaggaagacatgcaaatcgtgagatnnnnnnnnnnngggttcatatacctggta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
44047798 |
tgccttcaagcaaatacatcaagagatttcaagcacaatgcagcaagaggaagacatgcaaatggtgagat-aaaaaaaaaagggttcatatacctggta |
44047700 |
T |
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| Q |
416 |
actcagtgacctcgaaagatttggccatagtctgaaatagcataaaaaatattagtgctgattgattacacaagcaaatctccatagaaaataatgatgc |
515 |
Q |
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| T |
44047699 |
actcagtgacctcgaaagatttggccatagtctgaaatagcataaaaaatattagtgctgattgattacacaagcaaatctccatagaaaataatgatgc |
44047600 |
T |
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| Q |
516 |
ctcatttac |
524 |
Q |
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| T |
44047599 |
ctcatttac |
44047591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 3142559 - 3142801
Alignment:
| Q |
17 |
aatatctgggtacaaatccagcctttttcccaatcccaaagctttatgagcatatcatcagatgacgacagaacataaggaagggtgggatgaactgcca |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| |||| |
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| T |
3142559 |
aatatctgggtacagatccagcctttttcccaatcccaaagctttatgagcatatcatccgacgacgatagcacatagggaagggtgggatgaacagcca |
3142658 |
T |
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| Q |
117 |
cacatctaatgtaatctgtatgtgcttcaaatactttgactttatccattgtgttgtaattatatacacgaataaacatatcatctgctccagcaacaac |
216 |
Q |
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|||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3142659 |
cacacctaatgtaatctgagtgtgcctcaaatactttaactttatccattgtgttgtaattatatacacgaataaacatatcatctgctcctgcaacaac |
3142758 |
T |
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| Q |
217 |
ccactgtttgcgtgcaacaaacttcgctgatctaactgcaaaa |
259 |
Q |
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||||||||||||||||| |||||| ||||| |||||||||||| |
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| T |
3142759 |
ccactgtttgcgtgcaataaacttggctgacctaactgcaaaa |
3142801 |
T |
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