View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_high_9 (Length: 385)
Name: NF16453_high_9
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 116 - 385
Target Start/End: Original strand, 28927246 - 28927514
Alignment:
| Q |
116 |
taatctaagatgttaacctccgttgatggtgagtttttgaaacaaaaagtcaattggtccatcagttagatgtgaagatggtttcaatgctgcattaaat |
215 |
Q |
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| T |
28927246 |
taatctaagatgttaacctctgttgatggtgaatttt-gaaacaaaaagtcaattggtccatcagttagatgtgaagatggtttcaatgctgcattaaat |
28927344 |
T |
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| Q |
216 |
gcttctcgaaactttgcatcttctttccatgacttggtagttgcttgctataacttggcatctctcagtatctcggattttgaaatgaaagatgaattaa |
315 |
Q |
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| T |
28927345 |
gcttctcaaaactttgcatcttctttccatgacttggtagttgcttgctctaacttggcatctctcagtatctcggattttgaaatgaaagatgaattaa |
28927444 |
T |
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| Q |
316 |
tttttacatctagtgacttcaatttacataaggaatggtactcgacctttaataaatcaggaattaaggt |
385 |
Q |
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| T |
28927445 |
tttttacatctagtgacttcaatttacacaaggaatggaactcaaccttgaataaatcaggaattaaggt |
28927514 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 6845201 - 6845153
Alignment:
| Q |
327 |
agtgacttcaatttacataaggaatggtactcgacctttaataaatcag |
375 |
Q |
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| T |
6845201 |
agtgacttcaaattacacaaggaatggaactcaaccttcaataaatcag |
6845153 |
T |
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