View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_low_14 (Length: 369)
Name: NF16453_low_14
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 27441590 - 27441973
Alignment:
| Q |
1 |
atgccaccttctataactcacaat----gataatgctcctaacataaaccataatacaaaaacaccattccctgcagtacagatgagtcattcatttaca |
96 |
Q |
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| T |
27441590 |
atgccaccttctataactcacaattaatgataatgctcctaacataaaccataatacaaaagcatcattccctgcagtacagatgagtcattcatttaca |
27441689 |
T |
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| Q |
97 |
tatgggtcatactcaatagtcaatagaaatcactgaagaaagatcaagagaataaatctacaatgaagattttcaactcaactcttccttagtaga---- |
192 |
Q |
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| T |
27441690 |
tatgagtcatactcaatagtcaatagaaatcactgaagaaagatcaagagaataaatctacaatgaagattttcaactcaactcttccttagtggatgga |
27441789 |
T |
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| Q |
193 |
-------gtccagaagtccaatagaattcttataagaaataccaacaataaagcttttatgtatttccatataagaaatactagaaagctaaagaaaatc |
285 |
Q |
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| T |
27441790 |
tgtaggagtccagaagtccaatagaattcttataagaaataccaacaataaagcttttatgtatttccatataagaaatactagaaagctaaagaaaatc |
27441889 |
T |
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| Q |
286 |
tttagcaaatacaataacaaatgaaggaagctccctcatcaaaaccatcaacactagcaccagagatgaattttactaagcatc |
369 |
Q |
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| T |
27441890 |
tttagcaaatacaataacaaatgaaggaagctccctcatcaaaaccatcaacactagcaccagagatgaattttactaagcatc |
27441973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 202 - 344
Target Start/End: Original strand, 18704337 - 18704478
Alignment:
| Q |
202 |
tccaatagaattcttataagaaataccaacaataaagcttttatgtatttccatataagaaatactagaaagctaaagaaaatctttagcaaatacaata |
301 |
Q |
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| T |
18704337 |
tccaatagaattcttataaggaatatcaacattgaagctgtgatgtatt-ccatataagaaatgctaaaaaggtaaagaaattcttctgcaattacaata |
18704435 |
T |
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| Q |
302 |
acaaatgaaggaagctccctcatcaaaaccatcaacactagca |
344 |
Q |
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| T |
18704436 |
acaaaagaaggaagctcccttaacaaaaccatcaacactagca |
18704478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 188 - 344
Target Start/End: Original strand, 35268736 - 35268891
Alignment:
| Q |
188 |
gtagagtccagaagtccaatagaattcttataagaaataccaacaataaagcttttatgtatttccatataagaaatactagaaagctaaagaaaatctt |
287 |
Q |
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| T |
35268736 |
gtagactccacaaatccaatagaattcttataaggaatatcaacattgaagctgtgatgtatt-ccatataagaaatactaaaaaggtaaagaaattctt |
35268834 |
T |
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| Q |
288 |
tagcaaatacaataacaaatgaaggaagctccctcatcaaaaccatcaacactagca |
344 |
Q |
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| T |
35268835 |
ctgcgattataataacaaaagaaggaagctccctcaacaaaaccatcaacaccagca |
35268891 |
T |
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