View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_low_16 (Length: 339)
Name: NF16453_low_16
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 44048393 - 44048077
Alignment:
| Q |
1 |
ttagataaggtttgtcaccgcctgtaaagtaatcaacgcaattcactcctttctggtgagcatccaatgtaaaattgggatcaggagatccaagattcca |
100 |
Q |
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| T |
44048393 |
ttagataaggtttgtcaccgcctgtaaagtaatcaacgcaattcactcctttctggtgagcatccaatgtaaaattgggatcaggagatccaagattcca |
44048294 |
T |
|
| Q |
101 |
aatctggaaaaagataacaggggcaccaatgcattatactatgagtatgagcatagaaataatttaaaagaaggaaacaactggcaacaaagaacacaaa |
200 |
Q |
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| T |
44048293 |
aatctggaaaaagataacaggggcaccaatgcattatacgatgagtatgagcatagaaataatttaaaagaaggaaacaactggcaacaaagaacacaaa |
44048194 |
T |
|
| Q |
201 |
tatacctttatggtgcgatcaagagacgcactggcaaaggtgtttgtgtctttaggattaaatgtcacttgcataacataatgagaatgtccttcgaata |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44048193 |
tatacctttatggtgcgatcaagagacgcgctggcaaaggtgtttgtgtctttaggattaaatgtcacttgcataacataatgagaatgtccttcgaata |
44048094 |
T |
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| Q |
301 |
tctgggtacaaatccag |
317 |
Q |
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| T |
44048093 |
tctgggtacaaatccag |
44048077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 3142466 - 3142579
Alignment:
| Q |
204 |
acctttatggtgcgatcaagagacgcactggcaaaggtgtttgtgtctttaggattaaatgtcacttgcataacataatgagaatgtccttcgaatatct |
303 |
Q |
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| T |
3142466 |
acctttatggtccgatcaagagatgcactggcaaaggtatttgtatctttagggttgaatgtcacttgcatgacataatgagaatgtccctcaaatatct |
3142565 |
T |
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| Q |
304 |
gggtacaaatccag |
317 |
Q |
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| T |
3142566 |
gggtacagatccag |
3142579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 3142269 - 3142374
Alignment:
| Q |
1 |
ttagataaggtttgtcaccgcctgtaaagtaatcaacgcaattcactcctttctggtgagcatccaatgtaaaattgggatcaggagatccaagattcca |
100 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || || ||||||||||||||||| || |||||||| ||||||||||| |
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| T |
3142269 |
ttagataaggtttgtcaccacctgtaaaataatcaacgcagttcactcctttttgatgtgcatccaatgtaaaatttgggtcaggagaaccaagattcca |
3142368 |
T |
|
| Q |
101 |
aatctg |
106 |
Q |
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|||||| |
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| T |
3142369 |
aatctg |
3142374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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