View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16453_low_18 (Length: 330)

Name: NF16453_low_18

Description: NF16453

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16453_low_18

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 163; E-Value: 5e-87

Query Start/End: Original strand, 49 - 215

Target Start/End: Complemental strand, 31613590 - 31613424

Alignment:

Q	49	caaaattgaaatctaaacaaataaaccaaaccagcagcagtaagtaaagaaaggagacattagtttgcaagcatgttcatacactagatgttgcagaagt	148	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31613590	caaaattgaaatctaaacaattaaaccaaaccagcagcagtaagtaaagaaaggagacattagtttgcaagcatgttcatacactagatgttgcagaagt	31613491	T

Q	149	gaccttttgccctgcctccattccagttaatgtatcatagagtggttggtttagtgtctctggcaag	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31613490	gaccttttgccctgcctccattccagttaatgtatcatagagtggttggtttagtgtctctggcaag	31613424	T

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Target: chr4; HSP #2

Raw Score: 39; E-Value: 0.0000000000005

Query Start/End: Original strand, 267 - 313

Target Start/End: Complemental strand, 31613372 - 31613326

Alignment:

Q	267	ggcaatgatccacccaaaacgacaacaactggggccaatattgcacc	313	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31613372	ggcaatgatccacctaaaacgacaacaactggtgccaatattgcacc	31613326	T

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